Enhanced docking with the mining minima optimizer: Acceleration and side-chain flexibility

2002 ◽  
Vol 23 (16) ◽  
pp. 1656-1670 ◽  
Author(s):  
Visvaldas Kairys ◽  
Michael K. Gilson
Keyword(s):  
Side Chain ◽  
Chain Flexibility ◽  
Mining Minima

Incorporation of side chain flexibility into protein binding pockets using MTflex

2016 ◽  
Vol 24 (20) ◽  
pp. 4978-4987 ◽  
Author(s):  
Nupur Bansal ◽  
Zheng Zheng ◽  
Kenneth M. Merz
Keyword(s):  
Protein Binding ◽  
Side Chain ◽  
Chain Flexibility ◽  
Binding Pockets

Side-chain flexibility in proteins upon ligand binding

2000 ◽  
Vol 39 (3) ◽  
pp. 261-268 ◽  
Author(s):  
Rafael Najmanovich ◽  
Josef Kuttner ◽  
Vladimir Sobolev ◽  
Marvin Edelman
Keyword(s):  
Ligand Binding ◽  
Side Chain ◽  
Chain Flexibility

TSAR, a new graph-theoretical approach to computational modeling of protein side-chain flexibility: Modeling of ionization properties of proteins

2011 ◽  
Vol 79 (9) ◽  
pp. 2693-2710 ◽  
Author(s):  
Oleg V. Stroganov ◽  
Fedor N. Novikov ◽  
Alexey A. Zeifman ◽  
Viktor S. Stroylov ◽  
Ghermes G. Chilov
Keyword(s):  
Computational Modeling ◽  
Theoretical Approach ◽  
Side Chain ◽  
Chain Flexibility ◽  
Graph Theoretical Approach

NMR Characterization of Side Chain Flexibility and Backbone Structure in the Type I Antifreeze Protein at Near Freezing Temperatures†

Biochemistry ◽  
1996 ◽  
Vol 35 (51) ◽  
pp. 16698-16704 ◽  
Author(s):  
Wolfram Gronwald ◽  
Heman Chao ◽  
D. Venkat Reddy ◽  
Peter L. Davies ◽  
Brian D. Sykes ◽  
...  
Keyword(s):  
Antifreeze Protein ◽  
Side Chain ◽  
Type I ◽  
Chain Flexibility ◽  
Nmr Characterization ◽  
Backbone Structure ◽  
Freezing Temperatures
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