Issues in association mapping with high-density SNP data and diverse family structures

2007 ◽  
Vol 31 (S1) ◽  
pp. S22-S33 ◽  
Author(s):  
Heike Bickeböller ◽  
Katrina A.B. Goddard ◽  
Robert P. Igo ◽  
Peter Kraft ◽  
Jingky P. Lozano ◽  
...  
Keyword(s):  
Association Mapping ◽  
High Density ◽  
Family Structures ◽  
Snp Data

scholarly journals Open access resources for genome-wide association mapping in rice

2016 ◽  
Vol 7 (1) ◽  
Author(s):  
Susan R. McCouch ◽  
Mark H. Wright ◽  
Chih-Wei Tung ◽  
Lyza G. Maron ◽  
Kenneth L. McNally ◽  
...  
Keyword(s):  
Open Access ◽  
Association Mapping ◽  
High Density ◽  
Genome Wide Association ◽  
Minor Effect ◽  
Data Set ◽  
Genome Wide ◽  
Analytical Strategies ◽  
Biological Interpretation ◽  
Rice Improvement

Abstract Increasing food production is essential to meet the demands of a growing human population, with its rising income levels and nutritional expectations. To address the demand, plant breeders seek new sources of genetic variation to enhance the productivity, sustainability and resilience of crop varieties. Here we launch a high-resolution, open-access research platform to facilitate genome-wide association mapping in rice, a staple food crop. The platform provides an immortal collection of diverse germplasm, a high-density single-nucleotide polymorphism data set tailored for gene discovery, well-documented analytical strategies, and a suite of bioinformatics resources to facilitate biological interpretation. Using grain length, we demonstrate the power and resolution of our new high-density rice array, the accompanying genotypic data set, and an expanded diversity panel for detecting major and minor effect QTLs and subpopulation-specific alleles, with immediate implications for rice improvement.

scholarly journals Reference Genome Anchoring of High-Density Markers for Association Mapping and Genomic Prediction in European Winter Wheat

2019 ◽  
Vol 10 ◽  
Author(s):  
Olufunmilayo Ladejobi ◽  
Ian J. Mackay ◽  
Jesse Poland ◽  
Sebastien Praud ◽  
Julian M. Hibberd ◽  
...  
Keyword(s):  
Winter Wheat ◽  
Association Mapping ◽  
Genomic Prediction ◽  
Reference Genome ◽  
High Density ◽  
European Winter Wheat

scholarly journals Use of high-density SNP data to identify patterns of diversity and signatures of selection in broiler chickens

2016 ◽  
Vol 134 (2) ◽  
pp. 87-97 ◽  
Author(s):  
J.J. Stainton ◽  
B. Charlesworth ◽  
C.S. Haley ◽  
A. Kranis ◽  
K. Watson ◽  
...  
Keyword(s):  
Broiler Chickens ◽  
High Density ◽  
Snp Data ◽  
Signatures Of Selection

scholarly journals Comparative Analysis of CNV Calling Algorithms: Literature Survey and a Case Study Using Bovine High-Density SNP Data

Microarrays ◽  
2013 ◽  
Vol 2 (3) ◽  
pp. 171-185 ◽  
Author(s):  
Lingyang Xu ◽  
Yali Hou ◽  
Derek Bickhart ◽  
Jiuzhou Song ◽  
George Liu
Keyword(s):  
Comparative Analysis ◽  
Literature Survey ◽  
High Density ◽  
Snp Data

scholarly journals Visualization of Shared Genomic Regions and Meiotic Recombination in High-Density SNP Data

PLoS ONE ◽  
2009 ◽  
Vol 4 (8) ◽  
pp. e6711 ◽  
Author(s):  
Elisha D. O. Roberson ◽  
Jonathan Pevsner
Keyword(s):  
Meiotic Recombination ◽  
High Density ◽  
Snp Data ◽  
Genomic Regions

scholarly journals Detection of genomic signatures for pig hairlessness using high-density SNP data

2014 ◽  
Vol 1 (4) ◽  
pp. 307 ◽  
Author(s):  
Ying SU ◽  
Yi LONG ◽  
Xinjun LIAO ◽  
Huashui AI ◽  
Zhiyan ZHANG ◽  
...  
Keyword(s):  
High Density ◽  
Genomic Signatures ◽  
Snp Data
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