scholarly journals Using singleton densities to detect recent selection in Bos taurus

2021 ◽  
Author(s):  
Matthew Hartfield ◽  
Nina Aagaard Poulsen ◽  
Bernt Guldbrandtsen ◽  
Thomas Bataillon
Keyword(s):  
Bos Taurus ◽  
Recent Selection

scholarly journals Using singleton densities to detect recent selection in Bos taurus

2020 ◽  
Author(s):  
Matthew Hartfield ◽  
Nina Aagaard Poulsen ◽  
Bernt Guldbrandtsen ◽  
Thomas Bataillon
Keyword(s):  
Bos Taurus ◽  
Future Studies ◽  
Holstein Breed ◽  
Genome Data ◽  
Milk Protein Content ◽  
Widespread Availability ◽  
System Body ◽  
Genomic Regions ◽  
Polygenic Selection ◽  
Recent Selection

AbstractMany quantitative traits are subject to selection, where several genomic regions undergo small, simultaneous changes in allele frequency that collectively alter a phenotype. The widespread availability of genome data, along with novel statistical techniques, has made it easier to detect these changes. We apply one such method, the ‘Singleton Density Score’, to the Holstein breed of Bos taurus to detect recent selection (arising up to around 740 years ago). We identify several candidate genes for recent selection, including some relating to protein and cell regulation, the synaptic system, body growth, and immunity. We do not find strong evidence that two traits important for humans, milk–protein content and stature, have been subject to directional selection. These results inform on which genes underlie recent domestication in B. taurus. We propose how polygenic selection can be best investigated in future studies.

СРАВНИТЕЛЬНЫЙ АНАЛИЗ ГЕННЫХ КАРТ Bos taurus L. И Capra hircus L.

2013 ◽  
pp. 63-70
Author(s):  
Л.К. ЭРНСТ ◽  
◽  
П.М. КЛЕНОВИЦКИЙ ◽  
В.А. БАГИРОВ ◽  
Б.С. ИОЛЧИЕВ ◽  
...  
Keyword(s):  
Bos Taurus ◽  
Capra Hircus

scholarly journals Genome-wide identification of cyclin-dependent kinase (CDK) genes affecting adipocyte differentiation in cattle

BMC Genomics ◽  
2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Cuili Pan ◽  
Zhaoxiong Lei ◽  
Shuzhe Wang ◽  
Xingping Wang ◽  
Dawei Wei ◽  
...  
Keyword(s):  
Gene Family ◽  
Expression Analysis ◽  
Adipocyte Differentiation ◽  
Bos Taurus ◽  
Adipogenic Differentiation ◽  
Critical Role ◽  
Bos Indicus ◽  
Specific Expression ◽  
Genome Wide ◽  
A Genome

Abstract Background Cyclin-dependent kinases (CDKs) are protein kinases regulating important cellular processes such as cell cycle and transcription. Many CDK genes also play a critical role during adipogenic differentiation, but the role of CDK gene family in regulating bovine adipocyte differentiation has not been studied. Therefore, the present study aims to characterize the CDK gene family in bovine and study their expression pattern during adipocyte differentiation. Results We performed a genome-wide analysis and identified a number of CDK genes in several bovine species. The CDK genes were classified into 8 subfamilies through phylogenetic analysis. We found that 25 bovine CDK genes were distributed in 16 different chromosomes. Collinearity analysis revealed that the CDK gene family in Bos taurus is homologous with Bos indicus, Hybrid-Bos taurus, Hybrid Bos indicus, Bos grunniens and Bubalus bubalis. Several CDK genes had higher expression levels in preadipocytes than in differentiated adipocytes, as shown by RNA-seq analysis and qPCR, suggesting a role in the growth of emerging lipid droplets. Conclusion In this research, 185 CDK genes were identified and grouped into eight distinct clades in Bovidae, showing extensively homology. Global expression analysis of different bovine tissues and specific expression analysis during adipocytes differentiation revealed CDK4, CDK7, CDK8, CDK9 and CDK14 may be involved in bovine adipocyte differentiation. The results provide a basis for further study to determine the roles of CDK gene family in regulating adipocyte differentiation, which is beneficial for beef quality improvement.

scholarly journals Effect of Foot-and-Mouth Disease Vaccination on Acute Phase Immune Response and Anovulation in Hanwoo (Bos taurus coreanae)

Vaccines ◽  
2021 ◽  
Vol 9 (5) ◽  
pp. 419
Author(s):  
Daehyun Kim ◽  
Joonho Moon ◽  
Jaejung Ha ◽  
Doyoon Kim ◽  
Junkoo Yi
Keyword(s):  
Immune Response ◽  
Artificial Insemination ◽  
Bos Taurus ◽  
Foot And Mouth Disease ◽  
Test Group ◽  
Mouth Disease ◽  
Control Group ◽  
Amyloid A ◽  
Mouth Disease Virus ◽  
Foot And Mouth

Vaccination against foot-and-mouth disease is the most common method for preventing the spread of the disease; the negative effects include miscarriage, early embryo death, lower milk production, and decreased growth of fattening cattle. Therefore, in this study, we analyze the side effects of vaccination by determining the acute immune response and ovulation rate after vaccinating cows for foot-and-mouth disease. The test axis was synchronized with ovulation using 100 Hanwoo (Bos taurus coreanae) cows from the Gyeongsangbuk-do Livestock Research Institute; only individuals with estrus confirmed by ovarian ultrasound were used for the test. All test axes were artificially inseminated 21 days after the previous estrus date. The control group was administered 0.9% normal saline, the negative control was injected intramuscularly with lipopolysaccharide (LPS; 0.5 µg/kg), and the test group was administered a foot-and-mouth disease virus vaccine (FMDV vaccine; bioaftogen, O and A serotypes, inactivated vaccine) 2, 9, and 16 days before artificial insemination. White blood cells and neutrophils increased significantly 1 day after vaccination, and body temperature in the rumen increased for 16 h after vaccination. Ovulation was detected 1 day after artificial fertilization by ovarian ultrasound. The ovulation rates were as follows: control 89%, LPS 60%, FMDV vaccine (−2 d) 50%, FMDV vaccine (−9 d) 75%, and FMDV vaccine (−16 d) 75%. In particular, the FMDV vaccine (−2 d) test group confirmed that ovulation was delayed for 4 days after artificial insemination. In addition, it was confirmed that it took 9 days after inoculation for the plasma contents of haptoglobin and serum amyloid A to recover to the normal range as the main acute immune response factors. The conception rate of the FMDV vaccine (−2 d) group was 20%, which was significantly lower than that of the other test groups.

Expression of candidate genes for residual feed intake in tropically adapted Bos taurus and Bos indicus bulls under thermoneutral and heat stress environmental conditions

2021 ◽  
pp. 102998
Author(s):  
Bianca Vilela Pires ◽  
Nedenia Bonvino Stafuzza ◽  
Luara Afonso de Freitas ◽  
Maria Eugênia Zerlotti Mercadante ◽  
Ester Silveira Ramos ◽  
...  
Keyword(s):  
Heat Stress ◽  
Candidate Genes ◽  
Feed Intake ◽  
Environmental Conditions ◽  
Bos Taurus ◽  
Bos Indicus ◽  
Residual Feed Intake

scholarly journals Effect of a single or two doses of an anti-GnRH vaccine on testicle morpho-functional characteristics in Nelore bulls

2021 ◽  
Vol 53 (1) ◽  
Author(s):  
Emanuel M. Doroteu ◽  
Joao H. M. Viana ◽  
Jair A. Ferreira Junior ◽  
Juliana T. A. Macedo ◽  
Rodrigo A. Oliveira ◽  
...  
Keyword(s):  
Bos Taurus ◽  
Active Immunization ◽  
Control Group ◽  
Histopathological Analysis ◽  
Sample Collection ◽  
Functional Characteristics ◽  
Scrotal Circumference ◽  
Bos Taurus Indicus ◽  
Boost Dose ◽  
And Control

AbstractThe aim of this study was to compare testicle morpho-functional characteristics in bulls undergoing a single or two immunizations against GnRH. Nelore (Bos taurus indicus) bulls were randomly allocated into three experimental groups: G1 (n=12), a single 400 μg dose of anti-GnRH vaccine on day 0; G2 (n=11), a first 400 μg dose of anti-GnRH vaccine on day 0 followed by a second (boost) dose 30 days later; and control group (CG, n=12), 1 mL saline 0.9% at day 0. Every 30 days, from day 0 until slaughter at day 90, the bulls were weighed and underwent testicular biometry, semen collection and analysis, and blood sample collection for testosterone measurement. Immediately after slaughter, the testicles were removed and transport at 15°C to the laboratory for histopathological analysis. There was a decrease in testicular height (P=0.0476), width (P=0.0021), and in scrotal circumference (P=0.0001), after either a single (G1) or two (G2) immunizations against GnRH. Both G1 and G2 had lower testosterone concentrations than CG from day 60 on (P<0.01), but in G2, it was also lower than in G1 at day 90 (P=0.0006). All sperm parameters were affected by active immunization against GnRH (P<0.05), and in G2, averages were lesser (P<0.05) than in G1 from day 60 on. No signs of seminiferous tubule degeneration were found in any sample from the CG, contrasting with 75.0% and 100.0% of the samples from G1 and G2, respectively. In summary, immunocastration affected testicle morpho-functional characteristics in bulls in a time- and dose-dependent way.

scholarly journals 87 Evaluation of two stocking rates for grazing heifers on mixed sward native warm-season grass pastures in the Black Belt Prairie region

2020 ◽  
Vol 98 (Supplement_2) ◽  
pp. 27-27
Author(s):  
Jane A Parish ◽  
Kalisha C Yankey ◽  
Libby S Durst
Keyword(s):  
Nutritive Value ◽  
Bos Taurus ◽  
Warm Season ◽  
Stocking Rate ◽  
Sorghastrum Nutans ◽  
Study Objective ◽  
Little Bluestem ◽  
Year Effect ◽  
Plant Persistence ◽  
Stocking Rates

Abstract Optimal use of native warm-season grasses in pasture systems involves stocking grazing livestock at suitable rates. The study objective was to evaluate forage nutritive value and heifer ADG at two stocking rates on mixed-sward pastures of big bluestem (Andropogon gerardi Vitman), little bluestem (Andropogon scoparius), and indiangrass (Sorghastrum nutans L.). Pastures (3 replications) were stocked for 56 d during June and July in 2 yr with crossbred (Bos taurus) heifers (n = 24 heifers/year) stratified by initial BW (288.3 ± 1.7 kg) to one of two continuous stocking rates: 1.9 heifers/ha (HIGH) and 1.2 heifers/ha (LOW). Mean forage nutritive values on a DM basis were not different between HIGH and LOW stocking rates, respectively, for CP (7.0 ± 0.2% vs 6.7 ± 0.2%; P = 0.27), ADF (41.0 ± 0.6 vs. 41.4 ± 0.6; P = 0.64), NDF (69.9 ± 0.5 vs. 68.7 ± 0.5; P = 0.09), or relative feed value (RFV) (76.0 ± 1.0 vs. 76.9 ± 1.0; P = 0.53). There was a year effect (P &lt; 0.01) and stocking rate x day effect (P &lt; 0.01) for TDN. At LOW, TDN decreased from day 0 to day 28 (P = 0.02) and day 28 to day 56 (P = 0.02). At HIGH, TDN decreased (P &lt; 0.01) from day 0 to day 28 but remained steady until day 56 (P = 0.21). There was a stocking rate x day interaction (P &lt; 0.01) with ADG: LOW day 28 to 56 (1.20 ± 0.08 kg/day), HIGH day 0 to 28 (0.89 ± 0.08 kg/day), HIGH day 28 to 56 (0.44 ± 0.08 kg/day), and LOW day 0 to 28 (0.30 ± 0.08 kg/day). Further assessment of cattle ADG using more divergent stocking rates and plant persistence measures is warranted to inform ideal native grass stocking rate recommendations.

scholarly journals In Search of Species-Specific SNPs in a Non-Model Animal (European Bison (Bison bonasus))—Comparison of De Novo and Reference-Based Integrated Pipeline of STACKS Using Genotyping-by-Sequencing (GBS) Data

Animals ◽  
2021 ◽  
Vol 11 (8) ◽  
pp. 2226
Author(s):  
Sazia Kunvar ◽  
Sylwia Czarnomska ◽  
Cino Pertoldi ◽  
Małgorzata Tokarska
Keyword(s):  
Reference Genome ◽  
De Novo ◽  
Bos Taurus ◽  
Model Organism ◽  
Genotyping By Sequencing ◽  
Model Organisms ◽  
European Bison ◽  
Model Animal ◽  
Pcr Duplicates ◽  
Species Specific

The European bison is a non-model organism; thus, most of its genetic and genomic analyses have been performed using cattle-specific resources, such as BovineSNP50 BeadChip or Illumina Bovine 800 K HD Bead Chip. The problem with non-specific tools is the potential loss of evolutionary diversified information (ascertainment bias) and species-specific markers. Here, we have used a genotyping-by-sequencing (GBS) approach for genotyping 256 samples from the European bison population in Bialowieza Forest (Poland) and performed an analysis using two integrated pipelines of the STACKS software: one is de novo (without reference genome) and the other is a reference pipeline (with reference genome). Moreover, we used a reference pipeline with two different genomes, i.e., Bos taurus and European bison. Genotyping by sequencing (GBS) is a useful tool for SNP genotyping in non-model organisms due to its cost effectiveness. Our results support GBS with a reference pipeline without PCR duplicates as a powerful approach for studying the population structure and genotyping data of non-model organisms. We found more polymorphic markers in the reference pipeline in comparison to the de novo pipeline. The decreased number of SNPs from the de novo pipeline could be due to the extremely low level of heterozygosity in European bison. It has been confirmed that all the de novo/Bos taurus and Bos taurus reference pipeline obtained SNPs were unique and not included in 800 K BovineHD BeadChip.

scholarly journals Morphometric and Molecular Analyses of Ostertagia leptospicularis Assadov, 1953 from Ruminants: Species Diversity or Host Influence?

Animals ◽  
2021 ◽  
Vol 11 (1) ◽  
pp. 182
Author(s):  
Anna Wyrobisz-Papiewska ◽  
Jerzy Kowal ◽  
Elżbieta Łopieńska-Biernat ◽  
Paweł Nosal ◽  
Iwona Polak ◽  
...  
Keyword(s):  
Host Species ◽  
Roe Deer ◽  
Bos Taurus ◽  
Capreolus Capreolus ◽  
Nematode Species ◽  
Molecular Techniques ◽  
Systematic Classification ◽  
Morphological Variations ◽  
Wide Range ◽  
Induced Changes

Ostertagia leptospicularis Assadov, 1953 was formally described in roe deer Capreolus capreolus and has been reported in a wide range of ruminants, including other Cervidae, as well as Bovidae. Nematode specimens derived from various host species exhibit morphological similarity; however, some differences can be observed. It is unclear if this is due to the differential reaction of one nematode species in different host species (i.e., host-induced changes) or because of distinct nematode species in these hosts (i.e., species complex). This paper focuses on specimens resembling O. leptospicularis f. leptospicularis and its closely related species (Ostertagia ostertagi f. ostertagi) collected from various hosts. Morphometric and molecular techniques were applied to assess host-induced changes in nematode morphology and to clarify its systematic classification. There was an overall effect of host species on measurements of nematodes resembling O. leptospicularis (both males and females), but the distinctiveness of the specimens from cattle Bos taurus were highlighted. The results obtained may suggest that the specimens of O. leptospicularis from cattle in Germany and cervids in central Europe belong to different strains. Furthermore, nematodes from the cervid strain appear to circulate within particular host species, which can be seen in the stated morphological variations.

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