scholarly journals Phylogenetic significance of the characteristics of simple sequence repeats at the genus level based on the complete chloroplast genome sequences of Cyatheaceae

2021 ◽  
Author(s):  
Ming Zhu ◽  
Peipei Feng ◽  
Jingyao Ping ◽  
Jinye Li ◽  
YingJuan Su ◽  
...  
Keyword(s):  
Chloroplast Genome ◽  
Simple Sequence Repeats ◽  
Phylogenetic Significance ◽  
Genome Sequences ◽  
Complete Chloroplast Genome ◽  
Genus Level ◽  
Simple Sequence

scholarly journals The Complete Chloroplast Genome Sequence of Four Plant Species, Their SSR Identification and Phylogenetic Analysis

2021 ◽  
Author(s):  
Yueyi Zhu ◽  
Xianwen Zhang ◽  
Guopeng Li ◽  
Jiqian Xiang ◽  
Jinghua Su ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Molecular Markers ◽  
Chloroplast Genome ◽  
Simple Sequence Repeats ◽  
Genetic Information ◽  
Phylogenetic Trees ◽  
Complete Chloroplast Genome ◽  
Chloroplast Genomes ◽  
Chloroplast Genome Sequence ◽  
Simple Sequence

The chloroplast genome is conservative and stable, which can be employed to resolve genotypes. Currently, published nuclear sequences and molecular markers failed to differentiate the species from taxa robustly, including Machilus leptophylla, Hanceola exserta, Rubus bambusarum, and Rubus henryi. In this study, the four chloroplast genomes were characterized, and then their simple sequence repeats (SSRs) and phylogenetic positions were analyzed. The results demonstrated the four chloroplast genomes consisted of 152.624 kb, 153.296kb, 156.309 kb, and 158.953 kb in length, involving 124, 130, 129, and 131 genes, respectively. Moreover, the chloroplast genomes contained typical four regions. Six classes of SSR were identified from the four chloroplast genomes, in which mononucleotide was the class with the most members. The types of the repeats were various within individual classes of SSR. Phylogenetic trees indicated that M. leptophylla was clustered with M. yunnanensis, and H. exserta was confirmed under family Ocimeae. Additionally, R. bambusarum and R. henryi were clustered together, whereas they did not belong to the same species due to the differing SSR features. This research would provide evidence for resolving the species and contributed new genetic information for further study.

scholarly journals Gene Losses and Variations in Chloroplast Genome of Parasitic Plant Macrosolen and Phylogenetic Relationships within Santalales

2019 ◽  
Vol 20 (22) ◽  
pp. 5812
Author(s):  
Liping Nie ◽  
Yingxian Cui ◽  
Liwei Wu ◽  
Jianguo Zhou ◽  
Zhichao Xu ◽  
...  
Keyword(s):  
Chloroplast Genome ◽  
Phylogenetic Analyses ◽  
Folk Medicine ◽  
Genome Sequences ◽  
Illumina Hiseq ◽  
Protein Coding ◽  
Complete Chloroplast Genome ◽  
Chloroplast Genomes ◽  
Genome Analyses ◽  
Simple Sequence

Macrosolen plants are parasitic shrubs, several of which are important medicinal plants, that are used as folk medicine in some provinces of China. However, reports on Macrosolen are limited. In this study, the complete chloroplast genome sequences of Macrosolen cochinchinensis, Macrosolen tricolor and Macrosolen bibracteolatus are reported. The chloroplast genomes were sequenced by Illumina HiSeq X. The length of the chloroplast genomes ranged from 129,570 bp (M. cochinchinensis) to 126,621 bp (M. tricolor), with a total of 113 genes, including 35 tRNA, eight rRNA, 68 protein-coding genes, and two pseudogenes (ycf1 and rpl2). The simple sequence repeats are mainly comprised of A/T mononucleotide repeats. Comparative genome analyses of the three species detected the most divergent regions in the non-coding spacers. Phylogenetic analyses using maximum parsimony and maximum likelihood strongly supported the idea that Loranthaceae and Viscaceae are monophyletic clades. The data obtained in this study are beneficial for further investigations of Macrosolen in respect to evolution and molecular identification.

The complete chloroplast genome sequences of five Miscanthus species, and comparative analyses with other grass plastomes

2021 ◽  
Vol 162 ◽  
pp. 113248
Author(s):  
Jiajing Sheng ◽  
Mi Yan ◽  
Jia Wang ◽  
Lingling Zhao ◽  
Fasong Zhou ◽  
...  
Keyword(s):  
Chloroplast Genome ◽  
Genome Sequences ◽  
Complete Chloroplast Genome ◽  
Comparative Analyses

scholarly journals Complete chloroplast genome sequences of Poikilospermum lanceolatum (Urticeae)

2019 ◽  
Vol 4 (2) ◽  
pp. 2131-2132
Author(s):  
Xianhan Huang ◽  
Tao Deng ◽  
Nan Lin ◽  
Zhenyu Lv ◽  
Xu Zhang ◽  
...  
Keyword(s):  
Chloroplast Genome ◽  
Genome Sequences ◽  
Complete Chloroplast Genome

scholarly journals The complete chloroplast genome sequences of Barnardia japonica (Thunb.) Schult. and Schult.f

2018 ◽  
Vol 3 (2) ◽  
pp. 697-698 ◽  
Author(s):  
Rui-Hong Wang ◽  
Jing Gao ◽  
Mengdi Li ◽  
Xue Wu ◽  
Chao Shen ◽  
...  
Keyword(s):  
Chloroplast Genome ◽  
Genome Sequences ◽  
Complete Chloroplast Genome

scholarly journals Complete Chloroplast Genome Sequences of Four Meliaceae Species and Comparative Analyses

2018 ◽  
Vol 19 (3) ◽  
pp. 701 ◽  
Author(s):  
Malte Mader ◽  
Birte Pakull ◽  
Céline Blanc-Jolivet ◽  
Maike Paulini-Drewes ◽  
Zoéwindé Bouda ◽  
...  
Keyword(s):  
Chloroplast Genome ◽  
Genome Sequences ◽  
Complete Chloroplast Genome ◽  
Comparative Analyses
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