scholarly journals Characteristics of the mitochondrial genome of Rana omeimontis and related species in Ranidae: Gene rearrangements and phylogenetic relationships

2020 ◽  
Vol 10 (23) ◽  
pp. 12817-12837
Author(s):  
Lichun Jiang ◽  
Min Zhang ◽  
Lu Deng ◽  
Zhongwen Xu ◽  
Hongyan Shi ◽  
...  
Keyword(s):  
Mitochondrial Genome ◽  
Related Species ◽  
Phylogenetic Relationships ◽  
Gene Rearrangements

scholarly journals The complete mitochondrial genome of Sesarmops sinensis reveals gene rearrangements and phylogenetic relationships in Brachyura

PLoS ONE ◽  
2017 ◽  
Vol 12 (6) ◽  
pp. e0179800 ◽  
Author(s):  
Bo-Ping Tang ◽  
Zhao-Zhe Xin ◽  
Yu Liu ◽  
Dai-Zhen Zhang ◽  
Zheng-Fei Wang ◽  
...  
Keyword(s):  
Mitochondrial Genome ◽  
Phylogenetic Relationships ◽  
Complete Mitochondrial Genome ◽  
Gene Rearrangements

scholarly journals Whole mitochondrial genome of long-clawed mole vole (Prometheomys schaposchnikowi) from Turkey, with its phylogenetic relationships

Genomics ◽  
2020 ◽  
Vol 112 (5) ◽  
pp. 3247-3255
Author(s):  
Osman İbiş ◽  
Ahmet Yesari Selçuk ◽  
Benjamin N. Sacks ◽  
Barış Yıldız ◽  
Servet Özcan ◽  
...  
Keyword(s):  
Mitochondrial Genome ◽  
Phylogenetic Relationships ◽  
Mole Vole

Comparative mitochondrial genome analysis of Pythium insidiosum and related oomycete species provides new insights into genetic variation and phylogenetic relationships

Gene ◽  
2016 ◽  
Vol 575 (1) ◽  
pp. 34-41 ◽  
Author(s):  
Sithichoke Tangphatsornruang ◽  
Panthita Ruang-areerate ◽  
Duangjai Sangsrakru ◽  
Thidarat Rujirawat ◽  
Tassanee Lohnoo ◽  
...  
Keyword(s):  
Genetic Variation ◽  
Mitochondrial Genome ◽  
Genome Analysis ◽  
Phylogenetic Relationships ◽  
Pythium Insidiosum

scholarly journals The first mitochondrial genome of the genus Exhippolysmata (Decapoda: Caridea: Lysmatidae), with gene rearrangements and phylogenetic associations in Caridea

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Ying-ying Ye ◽  
Jing Miao ◽  
Ya-hong Guo ◽  
Li Gong ◽  
Li-hua Jiang ◽  
...  
Keyword(s):  
Mitochondrial Genome ◽  
Gene Order ◽  
Phylogenetic Analyses ◽  
Complete Mitochondrial Genome ◽  
Bootstrap Support ◽  
Trna Genes ◽  
Gene Rearrangements ◽  
Phylogenetic Studies ◽  
Gc Skew ◽  
Strong Bootstrap Support

AbstractThe complete mitochondrial genome (mitogenome) of animals can provide useful information for evolutionary and phylogenetic analyses. The mitogenome of the genus Exhippolysmata (i.e., Exhippolysmata ensirostris) was sequenced and annotated for the first time, its phylogenetic relationship with selected members from the infraorder Caridea was investigated. The 16,350 bp mitogenome contains the entire set of 37 common genes. The mitogenome composition was highly A + T biased at 64.43% with positive AT skew (0.009) and negative GC skew (− 0.199). All tRNA genes in the E. ensirostris mitogenome had a typical cloverleaf secondary structure, except for trnS1 (AGN), which appeared to lack the dihydrouridine arm. The gene order in the E. ensirostris mitogenome was rearranged compared with those of ancestral decapod taxa, the gene order of trnL2-cox2 changed to cox2-trnL2. The tandem duplication-random loss model is the most likely mechanism for the observed gene rearrangement of E. ensirostris. The ML and BI phylogenetic analyses place all Caridea species into one group with strong bootstrap support. The family Lysmatidae is most closely related to Alpheidae and Palaemonidae. These results will help to better understand the gene rearrangements and evolutionary position of E. ensirostris and lay a foundation for further phylogenetic studies of Caridea.

scholarly journals Genealogical inference of closely related species based on microsatellites

2001 ◽  
Vol 78 (3) ◽  
pp. 209-212 ◽  
Author(s):  
CHRISTIAN SCHLÖTTERER
Keyword(s):  
Population Genetics ◽  
Related Species ◽  
Phylogenetic Relationships ◽  
Microsatellite Analysis ◽  
Closely Related Species ◽  
Research Areas

Despite their unmatched popularity in many research areas, microsatellites have not yet become a major tool for the inference of genealogical relationships of closely related species. Recent studies have successfully extended the repertoire of microsatellite analysis beyond population genetics and demonstrate that phylogenetic relationships of closely related species can be inferred accurately with fewer loci than previously assumed.

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