scholarly journals Cis-regulatory sequence variation and association withMycoplasmaload in natural populations of the house finch (Carpodacus mexicanus)

2013 ◽  
Vol 3 (3) ◽  
pp. 655-666 ◽  
Author(s):  
Niclas Backström ◽  
Daria Shipilina ◽  
Mozes P. K. Blom ◽  
Scott V. Edwards
Keyword(s):  
Sequence Variation ◽  
Natural Populations ◽  
Regulatory Sequence ◽  
Carpodacus Mexicanus ◽  
House Finch

scholarly journals Isolation of a Poxvirus from a House Finch, Carpodacus mexicanus (Müller)

1986 ◽  
Vol 22 (3) ◽  
pp. 420-422 ◽  
Author(s):  
Douglas E. Docherty ◽  
Renee I. Romaine Long
Keyword(s):  
Carpodacus Mexicanus ◽  
House Finch

ITS sequence variation supports the hybrid origin of Malus toringoides Hughes

2007 ◽  
Vol 85 (7) ◽  
pp. 659-666 ◽  
Author(s):  
Ting-Ting Feng ◽  
Zhi-Qin Zhou ◽  
Jian-Min Tang ◽  
Ming-Hao Cheng ◽  
Shi-Liang Zhou
Keyword(s):  
Sequence Variation ◽  
Gene Tree ◽  
Natural Populations ◽  
Its Sequences ◽  
Nuclear Ribosomal Dna ◽  
Hybrid Origin ◽  
Putative Hybrid ◽  
Molecular Evidence ◽  
Sequence Information ◽  
Aflp Data

Malus toringoides (Rehd.) Hughes was suggested to have originated from hybridization between Malus transitoria Schneid. and Malus kansuensis Rehd., followed by repeated backcrossing to one of the putative parents. In the present study, the sequence information of the internal transcribed spacer (ITS) of nuclear ribosomal DNA (nrDNA) was used to re-examine the origin of this species. A total of 69 accessions from three natural populations (Maerkang, Xiaba and Kehe, Aba Autonomous Region, Sichuan, China) of M. toringoides and 10 accessions of its putative parents were analyzed. Using Malus angustifolia (Ait.) Michx., Malus ioensis (Wood) Britt. and Malus doumeri Chev. as outgroups, our phylogenetic analysis of the ITS sequences of M. toringoides and its putative parents showed that M. toringoides was not monophyletic, and two different types of ITS sequences which were obtained from each of the six accessions of M. toringoides were found to have clustered separately with those of the two putative parent species on the gene tree. A comparison of the sequence variation between M. toringoides and its putative parents revealed an additive variation pattern of ITS sequences in the putative hybrid species. These results are consistent with the previous morphological and amplified fragment length polymorphism (AFLP) data which suggested that M. toringoides was of hybrid origin. Our ITS data provide new molecular evidence for the hybrid origin hypothesis of M. toringoides and these results are of great importance for future study on hybridization, polyploid speciation and evolution of the genus Malus Miller.

scholarly journals MOLECULAR POPULATION GENETICS OF THE ALCOHOL DEHYDROGENASE GENE REGION OF DROSOPHILA MELANOGASTER

Genetics ◽  
1986 ◽  
Vol 114 (4) ◽  
pp. 1165-1190
Author(s):  
Charles F Aquadro ◽  
Susan F Desse ◽  
Molly M Bland ◽  
Charles H Langley ◽  
Cathy C Laurie-Ahlberg
Keyword(s):  
Drosophila Melanogaster ◽  
Alcohol Dehydrogenase ◽  
Sequence Variation ◽  
Natural Populations ◽  
Restriction Map ◽  
Length Variation ◽  
Eastern United States ◽  
Chromosome Inversion ◽  
Frequency Spectra ◽  
Adh Activity

ABSTRACT Variation in the DNA restriction map of a 13-kb region of chromosome ll including the alcohol dehydrogenase structural gene (Adh) was examined in Drosophila melanogaster from natural populations. Detailed analysis of 48 D. melanogaster lines representing four eastern United States populations revealed extensive DNA sequence variation due to base substitutions, insertions and deletions. Cloning of this region from several lines allowed characterization of length variation as due to unique sequence insertions or deletions [nine sizes; 21-200 base pairs (bp)] or transposable element insertions (several sizes, 340 bp to 10.2 kb, representing four different elements). Despite this extensive variation in sequences flanking the Adh gene, only one length polymorphism is clearly associated with altered Adh expression (a copia element approximately 250 bp 5′ to the distal transcript start site). Nonetheless, the frequency spectra of transposable elements within and between Drosophila species suggests they are slightly deleterious. Strong nonrandom associations are observed among Adh region sequence variants, ADH allozyme (Fast vs. Slow), ADH enzyme activity and the chromosome inversion ln(2L)t. Phylogenetic analysis of restriction map haplotypes suggest that the major twofold component of ADH activity variation (high vs. low, typical of Fast and Slow allozymes, respectively) is due to sequence variation tightly linked to and possibly distinct from that underlying the allozyme difference. The patterns of nucleotide and haplotype variation for Fast and Slow allozyme lines are consistent with the recent increase in frequency and spread of the Fast haplotype associated with high ADH activity. These data emphasize the important role of evolutionary history and strong nonrandom associations among tightly linked sequence variation as determinants of the patterns of variation observed in natural populations.

Variability in Island Populations of the House Finch

The Auk ◽  
1983 ◽  
Vol 100 (1) ◽  
pp. 180-187 ◽  
Author(s):  
Dennis M. Power
Keyword(s):  
Morphological Characters ◽  
Population Variation ◽  
Carpodacus Mexicanus ◽  
House Finch ◽  
Isolated Populations ◽  
Island Populations ◽  
Coefficients Of Variation ◽  
Variation Parameter ◽  
Guadalupe Island

Abstract Coefficients of variation and generalized variances are compared for nine morphological characters from five mainland and four island populations of the House Finch (Carpodacus mexicanus). The purpose is to test the idea that variability is reduced in isolated populations and that there is a "population variation parameter" that determines the level of variation in most characters. Variability is greater in bill characters for Guadalupe and San Benito Islands than for mainland and other island populations. There are no consistent differences among samples in variability of wing, tail, or hind-limb characters, except for a tendency toward increased tarsus-length variability in a southern Baja California population and reduced variability in this character in San Clemente Island and Guadalupe Island populations. In bill characters, increased variability is found in the most divergent populations. The results do not support the generalization that geographic (= genetic) isolation per se causes much of a change in variability in island populations of birds, nor is there support for the idea of a pervasive quality of the gene pool that determines the level of variability in most characters.

scholarly journals Dynamics of Conjunctivitis and Mycoplasma Gallisepticum Infections in House Finches

The Auk ◽  
2001 ◽  
Vol 118 (2) ◽  
pp. 327-333 ◽  
Author(s):  
Barry K. Hartup ◽  
Jean M. Bickal ◽  
Andre A. Dhondt ◽  
David H. Ley ◽  
George V. Kollias
Keyword(s):  
Breeding Season ◽  
Annual Variation ◽  
Seasonal Fluctuation ◽  
Host Density ◽  
Mycoplasma Gallisepticum ◽  
Disease Prevalence ◽  
Significant Decline ◽  
Carpodacus Mexicanus ◽  
House Finch ◽  
House Finches

Abstract Conjunctivitis, an infectious disease caused by Mycoplasma gallisepticum (MG), has produced a significant decline in eastern House Finches (Carpodacus mexicanus) of North America. In this paper, we present findings from two complementary studies designed to clarify annual and seasonal trends of MG infections in House Finches from the northeastern United States. The first was a field study of House Finches common to urban and residential habitat from Mercer County, New Jersey. We documented conjunctivitis in 11% (188/1,651) of the birds examined. Conjunctivitis prevalence in House Finches ranged from 0 to 43% per month, and exhibited marked seasonal fluctuation (elevations during fall and winter months and lower disease prevalence during the breeding season). There was excellent intermethod agreement on disease prevalence when measured by either presence of physical signs (conjunctivitis) or MG infection (kappa = 0.75). During the peak of the breeding season (April through June), conjunctivitis was present in a greater proportion of males lacking a cloacal protuberance than males with a cloacal protuberance (P < 0.01), but was similar between breeding and nonbreeding females. The second study, a volunteer survey, revealed the proportion of northeastern U.S. monitoring sites with at least one diseased House Finch each month ranged from a peak of 59% (August 1995) to a minimum of 12% (July 1999). Subsequent to the epidemic peak of disease in 1995, a series of recurring cycles occurred, with elevations in those proportions noted in late fall and winter and minima during the breeding season. Mycoplasmal conjunctivitis now appears endemic among House Finches of that region and demonstrates dynamics consistent with annual variation in host density.

scholarly journals Distribution of the Mosaic StructuredmurM Genes among Natural Populations ofStreptococcus pneumoniae

2000 ◽  
Vol 182 (23) ◽  
pp. 6798-6805 ◽  
Author(s):  
Sergio R. Filipe ◽  
Elena Severina ◽  
Alexander Tomasz
Keyword(s):  
Sequence Variation ◽  
Natural Populations ◽  
Laboratory Strain ◽  
Great Majority ◽  
Large Collection ◽  
Divergent Sequence ◽  
Chromatography Analysis ◽  
Exact Position ◽  
Complete Sequencing ◽  
Resistant Strains

ABSTRACT The presence and sequence variation of the murM gene were studied in a large collection (814 strains) of genetically diverseStreptococcus pneumoniae isolates, which included 27 different serogroups and both penicillin-resistant (423 isolates, 67 pulsed-field gel electrophoretic [PFGE] types) and intermediately penicillin-resistant (165 isolates, 66 PFGE types) and penicillin-susceptible (226 isolates, 135 PFGE types) strains. Diversity of the murM sequences was tested by hybridization with mainly two kinds of probes: one derived from the amplification of the nucleotide sequence between nucleotides 201 and 624 in the penicillin-susceptible laboratory strain R36A (murMA probe) and a second probe that amplified the comparable, highly divergent sequence in the penicillin-resistant strain Pen6 (murMBprobe). The great majority of the strains (761 of 814), including both penicillin-susceptible and penicillin-resistant isolates, reacted exclusively with the murMA probe. A smaller group of penicillin-resistant strains (48 of 814 isolates) reacted only with themurMB DNA probe, and an additional 5 isolates reacted with both probes. High-pressure liquid chromatography analysis of the peptidoglycan of strains hybridizing with murMB showed that they invariably contained an increased proportion of branched peptides. Complete sequencing of murM from a group of penicillin-resistant isolates allowed the identification of a number of different murMB alleles that differed in the length and exact position of the divergent (Pen6 type) sequences within the particular murM. The close similarity of these divergent sequences in the various murM alleles suggests a possible common heterologous origin.

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