scholarly journals Choosing and using diversity indices: insights for ecological applications from the German Biodiversity Exploratories

2014 ◽  
Vol 4 (18) ◽  
pp. 3514-3524 ◽  
Author(s):  
E. Kathryn Morris ◽  
Tancredi Caruso ◽  
François Buscot ◽  
Markus Fischer ◽  
Christine Hancock ◽  
...  
Keyword(s):  
Diversity Indices ◽  
Biodiversity Exploratories ◽  
Ecological Applications

Thysanoptera diversity associated with Mexican lemon (Citrus aurantifolia Christm.)

2020 ◽  
Vol 13 (9) ◽  
Author(s):  
Francisco Javier Avendaño-Gutiérrez ◽  
Salvador Aguirre Paleo ◽  
Alejandro Morales Hernández ◽  
Venecia Quesadas-Béjar
Keyword(s):  
Biosphere Reserve ◽  
Simple Random Sampling ◽  
Diversity Indices ◽  
Diaphorina Citri ◽  
Program Calculation ◽  
Homogeneous Relation ◽  
Candidatus Liberibacter ◽  
Scirtothrips Citri ◽  
Species Richness And Abundance ◽  
First Time

Objective: To calculate the monthly relative abundance of Thysanoptera species, according to the Margalef, Simpson and Shannon-Wiener diversity indices. Design / Methodology / Approach: The work was carried out in three geographic units with conventional management, during January-December, 2019 in the Reserva de la Biosfera Zicuirán-Infiernillo (Biosphere Reserve), Michoacán, Mexico. In each unit, 10 trees were selected through simple random sampling. Thrips counts were performed on ten shoots per tree every 15 d, for a total of 7200 shoots in the three geographic units. Thysanoptera individuals were placed in entomological jars. The variables were: number of thrips collected per shoot in sampled tree and geographic unit (orchard). To estimate the specific richness and structure of species, the program "calculation of diversity indices DIVERS" was used. Results: In the three geographical units studied, the recorded presence of Thysanoptera accounted for 12 to 17 species. For Nueva Italia 12 recorded species, two were permanent (16.66%), five abundant (41.66%), one scarce (8.3%) and four rare (33.33%). In Zicuirán, three species were permanent (17.64%), six abundant (35.29%), two scarce (11.76%) and six rare (35.29%). In Los Hoyos, four species were permanent (26.66%), four abundant (26.66%) and seven rare (46.66%). The abundance of species was represented by the genus Frankliniella and the species Scolothrips sexmaculatus and Scirtothrips citri. The highest species richness and abundance was found from January to May. In October and November, the value of the calculated indices was zero, which shows less richness and abundance of individuals. The best species uniformity was recorded during January and December, which meant a more stable and homogeneous relation. Study limitations/Implications. Pest resurgence, presence of Candidatus Liberibacter spp. and its vector Diaphorina citri. Findings / Conclusions: in Nueva Italia, 12 species were taxonomically determined; in Los Hoyos 15, and in Zicuirán 17 species, which are reported for the first time in the state of Michoacán, Mexico. At the geographic unit "Los Hoyos" diversity was higher, uniform and stable.

Climate resilience through natural regeneration in degraded natural forests of south-eastern hilly region of Bangladesh

2019 ◽  
Vol 48 (3) ◽  
pp. 417-425
Author(s):  
Md Khayrul Alam Bhuiyan ◽  
Md Akhter Hossain ◽  
Abdul Kadir Ibne Kamal ◽  
Mohammed Kamal Hossain ◽  
Mohammed Jashimuddin ◽  
...  
Keyword(s):  
Tree Species ◽  
Natural Regeneration ◽  
Diversity Indices ◽  
Acacia Auriculiformis ◽  
Quantitative Structure ◽  
Natural Forests ◽  
Climate Resilience ◽  
Hilly Region ◽  
Major Cluster ◽  
Ecological Dominance

A study was conducted by using 5m × 5m sized 179 quadrates following multistage random sampling method for comparative regenerating tree species, quantitative structure, diversity, similarity and climate resilience in the degraded natural forests and plantations of Cox's Bazar North and South Forest Divisions. A total of 70 regenerating tree species were recorded representing maximum (47 species) from degraded natural forests followed by 43 species from 0.5 year 39 species from 1.5 year and 29 species from 2.5 year old plantations. Quantitative structure relating to ecological dominance indicated dominance of Acacia auriculiformis, Grewia nervosa and Lithocarpus elegans seedlings in the plantations whereas seedlings of Aporosa wallichii, Suregada multiflora and Grewia nervosa in degraded natural forests. The degraded natural forests possess higher natural regeneration potential as showed by different diversity indices. The dominance-based cluster analysis showed 2 major cluster of species under one of which multiple sub-clusters of species exists. Poor plant diversity and presence of regenerating exotic species in the plantations indicated poor climate resilience of forest ecosystem in terms of natural regeneration.

Tree Diversity Conservation Initiatives in Sacred Groves of Kathmandu Valley, Nepal

2020 ◽  
Vol 19 (1) ◽  
pp. 60-68
Author(s):  
Laxmi Joshi Shrestha ◽  
Mohan Devkota ◽  
Bhuvan Keshar Sharma
Keyword(s):  
Tree Species ◽  
Management System ◽  
Survey Methods ◽  
Belief Systems ◽  
Decisive Role ◽  
Diversity Indices ◽  
Kathmandu Valley ◽  
Sacred Grove ◽  
Sacred Groves ◽  
The Government

 The study was conducted in two sacred groves of Kathmandu Valley, Pashupati Sacred Grove, and Bajrabarahi Sacred Grove, aiming to analyze the diversity of tree species and their role in conserving biodiversity. Parallel transects with concentric circular plot survey methods were applied for data collection. During the study, 23 tree species belonging to 22 genera and 15 families were recorded in Pashupati sacred grove, whereas only 19 tree species belonging to 16 genera and 13 families were recorded from Bajrabarahi Sacred Grove. The Shannon-Weiner diversity indices were higher (H=1.91) in Pashupati Sacred Grove compared to Bajrabarahi Sacred Grove, with 1.80 Shanon-Weiner Indices. Three types of forest were recorded from Pashupati Sacred Grove, namely the Schima-Pyrus forest, Myrsine-Persea forest, and Quercus-Myrsine forest, and only one Neolitsiacuipala forest from Bajrabarahi Sacred Grove. The sacred grove is one of the pioneers and community-based management regimes of the forest resource management system. It plays a decisive role in biodiversity conservation as it associated with many taboos and belief systems, thus providing a better opportunity for conservation compared to that of the government management system.

Aquatic and semi aquatic Hemiptera community of Sonebeel, the largest wetland of Assam, northeastern India

2018 ◽  
Vol 10 (13) ◽  
pp. 12792-12799
Author(s):  
Anupama Saha ◽  
Susmita Gupta
Keyword(s):  
Species Richness ◽  
Pest Control ◽  
Relative Abundance ◽  
Species Distribution ◽  
Diversity Indices ◽  
Environmental Data ◽  
Northeastern India ◽  
Ecological Roles

Aquatic and semiaquatic Hemiptera bugs play significant ecological roles, and they are important indicators and pest control agents.  Little information is currently available concerning its populations in southern Assam.  This study assessed hemipterans in four sites of Sonebeel, the largest wetland in Assam (3458.12 ha at full storage level), situated in Karimganj District.  The major inflow and outflow of the wetland are the rivers Singla and Kachua, respectively (the Kachua drains into the Kushiyara River).  Samples were trapped with pond nets and were seasonally recorded.  This study recorded a total of 28 species of aquatic and semiaquatic hemipterans belonging to 20 genera under nine families.  Population, geographical and environmental data (e.g., rainfall) were used to assess the relative abundance of species, species richness and different diversity indices, and species distribution. 

Theoretical Ecology

2020 ◽  
Keyword(s):  
Global Change ◽  
Food Webs ◽  
Change Theory ◽  
Theoretical Ecology ◽  
Novel Theory ◽  
Ecological Applications ◽  
Population Interactions ◽  
Theoretical Science ◽  
The Way ◽  
Forward Looking

This book continues the authoritative and established edited series of theoretical ecology books initiated by Robert May which helped pave the way for ecology to become a more robust theoretical science, encouraging the modern biologist to better understand the mathematics behind their theories. This latest instalment in the Theoretical Ecology series builds on the legacy of its predecessors with a completely new set of contributions. Rather than placing emphasis on the historical ideas in theoretical ecology, the editors have encouraged each contribution to: i) synthesize historical theoretical ideas within modern frameworks that have emerged in the last ten to twenty years (e.g., bridging population interactions to whole food webs); ii) describe novel theory that has emerged in the last twenty years from historical empirical areas (e.g., macro-ecology); and iii) cover the booming area of theoretical ecological applications (e.g., disease theory and global change theory). The result is a forward-looking synthesis that will help guide the field through a further decade of development and discovery.

scholarly journals Microbiota identified from preserved Anopheles

2021 ◽  
Vol 20 (1) ◽  
Author(s):  
Bianca E Silva ◽  
Zvifadzo Matsena Zingoni ◽  
Lizette L. Koekemoer ◽  
Yael L. Dahan-Moss
Keyword(s):  
Microbial Diversity ◽  
Vector Competence ◽  
Mosquito Species ◽  
Anopheles Funestus ◽  
Cost Effective ◽  
Diversity Indices ◽  
Malaria Vectors ◽  
Microbial Composition ◽  
Culture Independent ◽  
Culture Dependent

Abstract Background Mosquito species from the Anopheles gambiae complex and the Anopheles funestus group are dominant African malaria vectors. Mosquito microbiota play vital roles in physiology and vector competence. Recent research has focused on investigating the mosquito microbiota, especially in wild populations. Wild mosquitoes are preserved and transported to a laboratory for analyses. Thus far, microbial characterization post-preservation has been investigated in only Aedes vexans and Culex pipiens. Investigating the efficacy of cost-effective preservatives has also been limited to AllProtect reagent, ethanol and nucleic acid preservation buffer. This study characterized the microbiota of African Anopheles vectors: Anopheles arabiensis (member of the An. gambiae complex) and An. funestus (member of the An. funestus group), preserved on silica desiccant and RNAlater® solution. Methods Microbial composition and diversity were characterized using culture-dependent (midgut dissections, culturomics, MALDI-TOF MS) and culture-independent techniques (abdominal dissections, DNA extraction, next-generation sequencing) from laboratory (colonized) and field-collected mosquitoes. Colonized mosquitoes were either fresh (non-preserved) or preserved for 4 and 12 weeks on silica or in RNAlater®. Microbiota were also characterized from field-collected An. arabiensis preserved on silica for 8, 12 and 16 weeks. Results Elizabethkingia anophelis and Serratia oryzae were common between both vector species, while Enterobacter cloacae and Staphylococcus epidermidis were specific to females and males, respectively. Microbial diversity was not influenced by sex, condition (fresh or preserved), preservative, or preservation time-period; however, the type of bacterial identification technique affected all microbial diversity indices. Conclusions This study broadly characterized the microbiota of An. arabiensis and An. funestus. Silica- and RNAlater®-preservation were appropriate when paired with culture-dependent and culture-independent techniques, respectively. These results broaden the selection of cost-effective methods available for handling vector samples for downstream microbial analyses.

scholarly journals PSIX-6 Gastrointestinal microbiome of calves fed solid diets containing different levels and sources of NDF

2020 ◽  
Vol 98 (Supplement_4) ◽  
pp. 418-419
Author(s):  
Gercino F Virgínio Júnior ◽  
Milaine Poczynek ◽  
Ana Paula Silva ◽  
Ariany Toledo ◽  
Amanda Cezar ◽  
...  
Keyword(s):  
Illumina Miseq ◽  
Diversity Indices ◽  
Dairy Calves ◽  
Rrna Gene ◽  
Gastrointestinal Microbiome ◽  
Fecal Microbiome ◽  
Miseq Platform ◽  
Holstein Calves ◽  
Ad Libitum ◽  
Different Levels

Abstract Different levels and sources of NDF can modify the gastrointestinal microbiome. This study evaluated 18 Holstein calves housed in not-bedded suspended individual cages and fed one of three treatments: 22NDF - conventional starter containing 22% NDF (n = 7); 31NDF - starter with 31% NDF, replacing part of the corn by soybean hull (n = 6); and 22NDF+H - conventional starter with 22% NDF plus coast-cross hay ad libitum (n = 5). All animals received 4 L of milk replacer daily (24% CP; 18.5% fat; diluted to 12.5% solids), divided into two meals, being weaned at 8th week of age. After weaning, animals were housed in tropical shelters, fed with the respective solid diet and coast-cross hay ad libitum for all treatments. To evaluate the microbiome, ruminal fluid samples were collected using a modified Geishauser oral probe at weeks 2, 4, 6, 8 and 10, two hours after the morning feeding, and fecal samples were collected at birth (0) and at weeks 1, 2, 4, 8 and 10. The microbial community was determined by sequencing V3 and V4 region amplicons of the 16S rRNA gene that was amplified by PCR and sequenced by the Illumina MiSeq platform. Ruminal microbiome had no differences in diversity for the effects of weeks, treatments or interaction of both factors (Table 1). In feces, the diversity indices and evenness were higher for 22NDF+H when compared to 22NDF, with no difference for 31NDF. All indices were significantly affected by calves age. At birth, calves had the greatest diversity and richness. Week 1 and 2 had less evenness and diversity. Bacteroidota, Firmicutes_A and Firmicutes_C were the most abundant phylum in rumen and feces. The supply of hay was only effective in modifying the fecal microbiome of dairy calves, suggesting a resilience in the ruminal microbiome.

scholarly journals Responses and Indicators of Composition, Diversity, and Productivity of Plant Communities at Different Levels of Disturbance in a Wetland Ecosystem

Diversity ◽  
2021 ◽  
Vol 13 (6) ◽  
pp. 252
Author(s):  
Tingting Duan ◽  
Jing Zhang ◽  
Zhengjun Wang
Keyword(s):  
Plant Community ◽  
Plant Communities ◽  
Leisure Activity ◽  
Local Environment ◽  
Diversity Indices ◽  
Soil Parameters ◽  
Grazing Tolerance ◽  
Organic Matter Concentration ◽  
Drought Tolerant ◽  
Different Levels

Grassland tourism is a very popular leisure activity in many parts of the world. However, the presence of people in these areas causes disturbance to the local environment and grassland resources. This study analyzes the composition, diversity, and productivity under different levels of disturbance of the plant communities in the Kangxi Grassland Tourist Area and the Yeyahu Wetland Nature Reserve of Beijing, China. It aims to identify indicators of plant communities and their responses to different levels of disturbance. Our analysis shows that the plant community density and coverage have a certain compensatory increase under disturbed conditions. With the increase in disturbances, more drought-tolerant species have appeared (increased by 5.7%), some of which have become the grazing-tolerance indicator species in the trampled grazed area (TGA). For plant community productivity, biomass and height are good indicators for distinguishing different disturbances (p < 0.05). In addition, several diversity indices reveal the change of plant communities from different perspectives (three of the four indices were significant at the p < 0.05 level). For soil parameters, soil water content and organic matter concentration help to indicate different disturbance levels (the former has a 64% change). Moreover, the standard deviation of the plant community and soil parameters is also a good indicator of their spatial variability and disturbance levels, especially for the TGA. Our analysis confirms that the indicators of productivity, diversity, and soil parameters can indicate the disturbance level in each subarea from different perspectives. However, under disturbed conditions, a comprehensive analysis of these indicators is needed before we can accurately understand the state of health of the plant community.

scholarly journals On a Variational Definition for the Jensen-Shannon Symmetrization of Distances Based on the Information Radius

Entropy ◽  
2021 ◽  
Vol 23 (4) ◽  
pp. 464
Author(s):  
Frank Nielsen
Keyword(s):  
Diversity Index ◽  
Diversity Indices ◽  
Shannon Diversity Index ◽  
Probability Measures ◽  
Variational Optimization ◽  
Shannon Diversity ◽  
Concept Of Information ◽  
Jensen Shannon Divergence

We generalize the Jensen-Shannon divergence and the Jensen-Shannon diversity index by considering a variational definition with respect to a generic mean, thereby extending the notion of Sibson’s information radius. The variational definition applies to any arbitrary distance and yields a new way to define a Jensen-Shannon symmetrization of distances. When the variational optimization is further constrained to belong to prescribed families of probability measures, we get relative Jensen-Shannon divergences and their equivalent Jensen-Shannon symmetrizations of distances that generalize the concept of information projections. Finally, we touch upon applications of these variational Jensen-Shannon divergences and diversity indices to clustering and quantization tasks of probability measures, including statistical mixtures.

scholarly journals Straightforward Synthesis of Mn3O4/ZnO/Eu2O3-Based Ternary Heterostructure Nano-Photocatalyst and Its Application for the Photodegradation of Methyl Orange and Methylene Blue Dyes

Molecules ◽  
2021 ◽  
Vol 26 (15) ◽  
pp. 4661
Author(s):  
Jayachamarajapura Pranesh Shubha ◽  
Haralahalli Shivappa Savitha ◽  
Syed Farooq Adil ◽  
Mujeeb Khan ◽  
Mohammad Rafe Hatshan ◽  
...  
Keyword(s):  
Methylene Blue ◽  
Methyl Orange ◽  
Irradiation Time ◽  
Solar Irradiation ◽  
Anionic Dyes ◽  
One Pot ◽  
Sunlight Irradiation ◽  
Ft Ir ◽  
Degradation Activity ◽  
Ecological Applications

Zinc oxide-ternary heterostructure Mn3O4/ZnO/Eu2O3 nanocomposites were successfully prepared via waste curd as fuel by a facile one-pot combustion procedure. The fabricated heterostructures were characterized utilizing XRD, UV–Visible, FT-IR, FE-SEM, HRTEM and EDX analysis. The photocatalytic degradation efficacy of the synthesized ternary nanocomposite was evaluated utilizing model organic pollutants of methylene blue (MB) and methyl orange (MO) in water as examples of cationic dyes and anionic dyes, respectively, under natural solar irradiation. The effect of various experimental factors, viz. the effect of a light source, catalyst dosage, irradiation time, pH of dye solution and dye concentration on the photodegradation activity, was systematically studied. The ternary Mn3O4/ZnO/Eu2O3 photocatalyst exhibited excellent MB and MO degradation activity of 98% and 96%, respectively, at 150 min under natural sunlight irradiation. Experiments further conclude that the fabricated nanocomposite exhibits pH-dependent photocatalytic efficacy, and for best results, concentrations of dye and catalysts have to be maintained in a specific range. The prepared photocatalysts are exemplary and could be employed for wastewater handling and several ecological applications.

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