Scalable multicore architectures for long DNA sequence comparison

Friman Sánchez; Felipe Cabarcas; Alex Ramirez; Mateo Valero

doi:10.1002/cpe.1753

Scalable multicore architectures for long DNA sequence comparison

Concurrency and Computation Practice and Experience ◽

10.1002/cpe.1753 ◽

2011 ◽

Vol 23 (17) ◽

pp. 2205-2219 ◽

Cited By ~ 1

Author(s):

Friman Sánchez ◽

Felipe Cabarcas ◽

Alex Ramirez ◽

Mateo Valero

Keyword(s):

Dna Sequence ◽

Sequence Comparison ◽

Multicore Architectures ◽

Dna Sequence Comparison

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Long DNA Sequence Comparison on Multicore Architectures

Euro-Par 2010 - Parallel Processing - Lecture Notes in Computer Science ◽

10.1007/978-3-642-15291-7_24 ◽

2010 ◽

pp. 247-259 ◽

Cited By ~ 6

Author(s):

Friman Sánchez ◽

Felipe Cabarcas ◽

Alex Ramirez ◽

Mateo Valero

Keyword(s):

Dna Sequence ◽

Sequence Comparison ◽

Multicore Architectures ◽

Dna Sequence Comparison

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Parallel Megabase DNA Sequence Comparison with OpenCL

2015 IEEE 22nd International Conference on High Performance Computing (HiPC) ◽

10.1109/hipc.2015.13 ◽

2015 ◽

Cited By ~ 1

Author(s):

Marco Antonio C. de Figueiredo ◽

Edans F. de O. Sandes ◽

Alba Cristina M. A. de Melo

Keyword(s):

Dna Sequence ◽

Sequence Comparison ◽

Dna Sequence Comparison

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Phylogenetic relationships ofSalmonellabased on DNA sequence comparison ofatpDencoding the Î² subunit of ATP synthase

FEMS Microbiology Letters ◽

10.1111/j.1574-6968.1998.tb12933.x ◽

1998 ◽

Vol 161 (1) ◽

pp. 89-96

Author(s):

Henrik Christensen ◽

John Elmerdahl Olsen

Keyword(s):

Dna Sequence ◽

Atp Synthase ◽

Phylogenetic Relationships ◽

Sequence Comparison ◽

Dna Sequence Comparison

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DNA sequence comparison of human and mouse retinitis pigmentosa GTPase regulator (RPGR) identifies tissue-specific exons and putative regulatory elements

Human Genetics ◽

10.1007/s004390100572 ◽

2001 ◽

Vol 109 (3) ◽

pp. 271-278 ◽

Cited By ~ 11

Author(s):

Renate Kirschner ◽

Deniz Erturk ◽

Christina Zeitz ◽

Selen Sahin ◽

Juliane Ramser ◽

...

Keyword(s):

Retinitis Pigmentosa ◽

Dna Sequence ◽

Sequence Comparison ◽

Regulatory Elements ◽

Tissue Specific ◽

Retinitis Pigmentosa Gtpase Regulator ◽

Human And Mouse ◽

Dna Sequence Comparison

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Ordered index seed algorithm for intensive DNA sequence comparison

2008 IEEE International Symposium on Parallel and Distributed Processing ◽

10.1109/ipdps.2008.4536172 ◽

2008 ◽

Cited By ~ 2

Author(s):

Dominique Lavenier

Keyword(s):

Dna Sequence ◽

Sequence Comparison ◽

Dna Sequence Comparison

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A Burrows-Wheeler Transform Based Method for DNA Sequence Comparison

Computational Biology and Bioinformatics ◽

10.11648/j.cbb.20140203.11 ◽

2014 ◽

Vol 2 (3) ◽

pp. 33

Author(s):

Chun Li

Keyword(s):

Dna Sequence ◽

Sequence Comparison ◽

Burrows Wheeler Transform ◽

Dna Sequence Comparison

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DNA Sequence Comparison Viewers

Encyclopedia of Genetics, Genomics, Proteomics and Informatics ◽

10.1007/978-1-4020-6754-9_4708 ◽

2008 ◽

pp. 539-539

Keyword(s):

Dna Sequence ◽

Sequence Comparison ◽

Dna Sequence Comparison

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Genetic similarity among Arabidopsis thaliana ecotypes estimated by DNA sequence comparison

Plant Molecular Biology ◽

10.1007/bf00020488 ◽

1996 ◽

Vol 32 (5) ◽

pp. 915-922 ◽

Cited By ~ 20

Author(s):

Christian S. Hardtke ◽

Judith M�ller ◽

Thomas Berleth

Keyword(s):

Arabidopsis Thaliana ◽

Dna Sequence ◽

Sequence Comparison ◽

Genetic Similarity ◽

Dna Sequence Comparison

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Phylogenetic analysis by 16S ribosomal DNA sequence comparison reveals two unrelated groups of species within the genus

FEMS Microbiology Letters ◽

10.1016/0378-1097(95)00138-u ◽

1995 ◽

Vol 129 (1) ◽

pp. 69-73 ◽

Cited By ~ 4

Author(s):

F RAINEY ◽

P JANSSEN

Keyword(s):

Phylogenetic Analysis ◽

Dna Sequence ◽

Ribosomal Dna ◽

Sequence Comparison ◽

16S Ribosomal Dna ◽

Dna Sequence Comparison ◽

Ribosomal Dna Sequence

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FPGA based architecture for DNA sequence comparison and database search

Proceedings 20th IEEE International Parallel & Distributed Processing Symposium ◽

10.1109/ipdps.2006.1639443 ◽

2006 ◽

Cited By ~ 25

Author(s):

E. Sotiriades ◽

C. Kozanitis ◽

A. Dollas

Keyword(s):

Dna Sequence ◽

Sequence Comparison ◽

Database Search ◽

Dna Sequence Comparison

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