scholarly journals A Web Service for Biomedical Term Look-Up

2005 ◽  
Vol 6 (1-2) ◽  
pp. 86-93 ◽  
Author(s):  
Henk Harkema ◽  
Ian Roberts ◽  
Rob Gaizauskas ◽  
Mark Hepple
Keyword(s):  
Natural Language ◽  
Web Service ◽  
Language Processing ◽  
Large Scale ◽  
Information Sources ◽  
Text Processing ◽  
Processing System ◽  
Relevant Information ◽  
Automatic Identification ◽  
Efficient Manner

Recent years have seen a huge increase in the amount of biomedical information that is available in electronic format. Consequently, for biomedical researchers wishing to relate their experimental results to relevant data lurking somewhere within this expanding universe of on-line information, the ability to access and navigate biomedical information sources in an efficient manner has become increasingly important. Natural language and text processing techniques can facilitate this task by making the information contained in textual resources such as MEDLINE more readily accessible and amenable to computational processing. Names of biological entities such as genes and proteins provide critical links between different biomedical information sources and researchers' experimental data. Therefore, automatic identification and classification of these terms in text is an essential capability of any natural language processing system aimed at managing the wealth of biomedical information that is available electronically. To support term recognition in the biomedical domain, we have developed Termino, a large-scale terminological resource for text processing applications, which has two main components: first, a database into which very large numbers of terms can be loaded from resources such as UMLS, and stored together with various kinds of relevant information; second, a finite state recognizer, for fast and efficient identification and mark-up of terms within text. Since many biomedical applications require this functionality, we have made Termino available to the community as a web service, which allows for its integration into larger applications as a remotely located component, accessed through a standardized interface over the web.

scholarly journals Sentiment Analysis Techniques Applied to Raw-Text Data from a Csq-8 Questionnaire about Mindfulness in Times of COVID-19 to Improve Strategy Generation

2021 ◽  
Vol 18 (12) ◽  
pp. 6408
Author(s):  
Mario Jojoa Acosta ◽  
Gema Castillo-Sánchez ◽  
Begonya Garcia-Zapirain ◽  
Isabel de la Torre Díez ◽  
Manuel Franco-Martín
Keyword(s):  
Health Care ◽  
Natural Language Processing ◽  
Natural Language ◽  
Sentiment Analysis ◽  
Transfer Learning ◽  
Language Processing ◽  
Health Care Professionals ◽  
Ground Truth ◽  
Relevant Information ◽  
Free Text

The use of artificial intelligence in health care has grown quickly. In this sense, we present our work related to the application of Natural Language Processing techniques, as a tool to analyze the sentiment perception of users who answered two questions from the CSQ-8 questionnaires with raw Spanish free-text. Their responses are related to mindfulness, which is a novel technique used to control stress and anxiety caused by different factors in daily life. As such, we proposed an online course where this method was applied in order to improve the quality of life of health care professionals in COVID 19 pandemic times. We also carried out an evaluation of the satisfaction level of the participants involved, with a view to establishing strategies to improve future experiences. To automatically perform this task, we used Natural Language Processing (NLP) models such as swivel embedding, neural networks, and transfer learning, so as to classify the inputs into the following three categories: negative, neutral, and positive. Due to the limited amount of data available—86 registers for the first and 68 for the second—transfer learning techniques were required. The length of the text had no limit from the user’s standpoint, and our approach attained a maximum accuracy of 93.02% and 90.53%, respectively, based on ground truth labeled by three experts. Finally, we proposed a complementary analysis, using computer graphic text representation based on word frequency, to help researchers identify relevant information about the opinions with an objective approach to sentiment. The main conclusion drawn from this work is that the application of NLP techniques in small amounts of data using transfer learning is able to obtain enough accuracy in sentiment analysis and text classification stages.

Machine-learning as a validated tool to characterize individual differences in free recall of naturalistic events.

2021 ◽  
Author(s):  
Xinxu Shen ◽  
Troy Houser ◽  
David Victor Smith ◽  
Vishnu P. Murty
Keyword(s):  
Machine Learning ◽  
Natural Language Processing ◽  
Natural Language ◽  
Individual Difference ◽  
Language Processing ◽  
Large Scale ◽  
High Reliability ◽  
Difference Analysis ◽  
Universal Sentence ◽  
Natural Language Processing Tool

The use of naturalistic stimuli, such as narrative movies, is gaining popularity in many fields, characterizing memory, affect, and decision-making. Narrative recall paradigms are often used to capture the complexity and richness of memory for naturalistic events. However, scoring narrative recalls is time-consuming and prone to human biases. Here, we show the validity and reliability of using a natural language processing tool, the Universal Sentence Encoder (USE), to automatically score narrative recall. We compared the reliability in scoring made between two independent raters (i.e., hand-scored) and between our automated algorithm and individual raters (i.e., automated) on trial-unique, video clips of magic tricks. Study 1 showed that our automated segmentation approaches yielded high reliability and reflected measures yielded by hand-scoring, and further that the results using USE outperformed another popular natural language processing tool, GloVe. In study two, we tested whether our automated approach remained valid when testing individual’s varying on clinically-relevant dimensions that influence episodic memory, age and anxiety. We found that our automated approach was equally reliable across both age groups and anxiety groups, which shows the efficacy of our approach to assess narrative recall in large-scale individual difference analysis. In sum, these findings suggested that machine learning approaches implementing USE are a promising tool for scoring large-scale narrative recalls and perform individual difference analysis for research using naturalistic stimuli.

scholarly journals GATECloud.net: a platform for large-scale, open-source text processing on the cloud

2013 ◽  
Vol 371 (1983) ◽  
pp. 20120071 ◽  
Author(s):  
Valentin Tablan ◽  
Ian Roberts ◽  
Hamish Cunningham ◽  
Kalina Bontcheva
Keyword(s):  
Cloud Computing ◽  
Language Processing ◽  
Large Scale ◽  
Virtual Machines ◽  
Cost Benefit Analysis ◽  
Text Processing ◽  
Cost Benefit ◽  
Data Intensive ◽  
On Demand ◽  
Usage Evaluation

Cloud computing is increasingly being regarded as a key enabler of the ‘democratization of science’, because on-demand, highly scalable cloud computing facilities enable researchers anywhere to carry out data-intensive experiments. In the context of natural language processing (NLP), algorithms tend to be complex, which makes their parallelization and deployment on cloud platforms a non-trivial task. This study presents a new, unique, cloud-based platform for large-scale NLP research—GATECloud. net. It enables researchers to carry out data-intensive NLP experiments by harnessing the vast, on-demand compute power of the Amazon cloud. Important infrastructural issues are dealt with by the platform, completely transparently for the researcher: load balancing, efficient data upload and storage, deployment on the virtual machines, security and fault tolerance. We also include a cost–benefit analysis and usage evaluation.

scholarly journals Designing and Validating an Annotation Model of Dynamic Modality for English and Spanish: Issues and Problems

10.29007/pc58 ◽  
2018 ◽  
Author(s):  
Julia Lavid ◽  
Marta Carretero ◽  
Juan Rafael Zamorano
Keyword(s):  
Natural Language Processing ◽  
Natural Language ◽  
Language Processing ◽  
Large Scale ◽  
Reliability Study ◽  
Annotation Scheme ◽  
High Degree ◽  
Difficult Cases

In this paper we set forth an annotation model for dynamic modality in English and Spanish, given its relevance not only for contrastive linguistic purposes, but also for its impact on practical annotation tasks in the Natural Language Processing (NLP) community. An annotation scheme is proposed, which captures both the functional-semantic meanings and the language-specific realisations of dynamic meanings in both languages. The scheme is validated through a reliability study performed on a randomly selected set of one hundred and twenty sentences from the MULTINOT corpus, resulting in a high degree of inter-annotator agreement. We discuss our main findings and give attention to the difficult cases as they are currently being used to develop detailed guidelines for the large-scale annotation of dynamic modality in English and Spanish.

scholarly journals From Text to Thought: How Analyzing Language Can Advance Psychological Science

2020 ◽  
Author(s):  
Joshua Conrad Jackson ◽  
Joseph Watts ◽  
Johann-Mattis List ◽  
Ryan Drabble ◽  
Kristen Lindquist
Keyword(s):  
Natural Language ◽  
Language Processing ◽  
Statistical Power ◽  
Culturally Diverse ◽  
Large Scale ◽  
Human Cognition ◽  
Comparative Linguistics ◽  
Psychological Science ◽  
Language Analysis ◽  
The Mind

Humans have been using language for thousands of years, but psychologists seldom consider what natural language can tell us about the mind. Here we propose that language offers a unique window into human cognition. After briefly summarizing the legacy of language analyses in psychological science, we show how methodological advances have made these analyses more feasible and insightful than ever before. In particular, we describe how two forms of language analysis—comparative linguistics and natural language processing—are already contributing to how we understand emotion, creativity, and religion, and overcoming methodological obstacles related to statistical power and culturally diverse samples. We summarize resources for learning both of these methods, and highlight the best way to combine language analysis techniques with behavioral paradigms. Applying language analysis to large-scale and cross-cultural datasets promises to provide major breakthroughs in psychological science.

scholarly journals Comparison of Templates with Word2vec in Finding Semantic Relations Between Words

2018 ◽  
pp. 13-17
Author(s):  
Kaan Ant ◽  
Ugur Sogukpinar ◽  
Mehmet Fatif Amasyali
Keyword(s):  
Natural Language Processing ◽  
Natural Language ◽  
Language Processing ◽  
Large Scale ◽  
Semantic Relations ◽  
Template Method ◽  
Semantic Relationships ◽  
Semantic Spaces

The use of databases those containing semantic relationships between words is becoming increasingly widespread in order to make natural language processing work more effective. Instead of the word-bag approach, the suggested semantic spaces give the distances between words, but they do not express the relation types. In this study, it is shown how semantic spaces can be used to find the type of relationship and it is compared with the template method. According to the results obtained on a very large scale, while is_a and opposite are more successful for semantic spaces for relations, the approach of templates is more successful in the relation types at_location, made_of and non relational.

scholarly journals A Natural Language Processing System for Extracting Evidence of Drug Repurposing from Scientific Publications

2020 ◽  
Vol 34 (08) ◽  
pp. 13369-13381
Author(s):  
Shivashankar Subramanian ◽  
Ioana Baldini ◽  
Sushma Ravichandran ◽  
Dmitriy A. Katz-Rogozhnikov ◽  
Karthikeyan Natesan Ramamurthy ◽  
...  
Keyword(s):  
Natural Language Processing ◽  
Natural Language ◽  
Language Processing ◽  
Generic Drugs ◽  
Low Cost ◽  
Processing System ◽  
Drug Repurposing ◽  
Cancer Type ◽  
Entity Extraction ◽  
Scientific Publications

More than 200 generic drugs approved by the U.S. Food and Drug Administration for non-cancer indications have shown promise for treating cancer. Due to their long history of safe patient use, low cost, and widespread availability, repurposing of these drugs represents a major opportunity to rapidly improve outcomes for cancer patients and reduce healthcare costs. In many cases, there is already evidence of efficacy for cancer, but trying to manually extract such evidence from the scientific literature is intractable. In this emerging applications paper, we introduce a system to automate non-cancer generic drug evidence extraction from PubMed abstracts. Our primary contribution is to define the natural language processing pipeline required to obtain such evidence, comprising the following modules: querying, filtering, cancer type entity extraction, therapeutic association classification, and study type classification. Using the subject matter expertise on our team, we create our own datasets for these specialized domain-specific tasks. We obtain promising performance in each of the modules by utilizing modern language processing techniques and plan to treat them as baseline approaches for future improvement of individual components.

Sign in / Sign up

Export Citation Format

Share Document