Parallel nucleic acid helices with hoogsteen base pairing: Symmetry and structure

Biopolymers ◽  
1994 ◽  
Vol 34 (12) ◽  
pp. 1573-1581 ◽  
Author(s):  
G. Raghunathan ◽  
H. Todd Miles ◽  
V. Sasisekharan
Keyword(s):  
Nucleic Acid ◽  
Pairing Symmetry ◽  
Base Pairing ◽  
Hoogsteen Base Pairing

scholarly journals Synthesis of phosphoramidites of isoGNA, an isomer of glycerol nucleic acid

2014 ◽  
Vol 10 ◽  
pp. 2131-2138 ◽  
Author(s):  
Keunsoo Kim ◽  
Venkateshwarlu Punna ◽  
Phaneendrasai Karri ◽  
Ramanarayanan Krishnamurthy
Keyword(s):  
Nucleic Acid ◽  
Nucleic Acids ◽  
Structural Unit ◽  
Easy Access ◽  
Alternative Route ◽  
Base Pairing ◽  
Limited Base ◽  
Glycerol Nucleic Acid ◽  
Adenine Derivative

IsoGNA, an isomer of glycerol nucleic acid GNA, is a flexible (acyclic) nucleic acid with bases directly attached to its linear backbone. IsoGNA exhibits (limited) base-pairing properties which are unique compared to other known flexible nucleic acids. Herein, we report on the details of the preparation of isoGNA phosphoramidites and an alternative route for the synthesis of the adenine derivative. The synthetic improvements described here enable an easy access to isoGNA and allows for the further exploration of this structural unit in oligonucleotide chemistry thereby spurring investigations of its usefulness and applicability.

Replication by human DNA polymerase-ι occurs by Hoogsteen base-pairing

Nature ◽  
2004 ◽  
Vol 430 (6997) ◽  
pp. 377-380 ◽  
Author(s):  
Deepak T. Nair ◽  
Robert E. Johnson ◽  
Satya Prakash ◽  
Louise Prakash ◽  
Aneel K. Aggarwal
Keyword(s):  
Dna Polymerase ◽  
Base Pairing ◽  
Human Dna ◽  
Hoogsteen Base Pairing ◽  
Dna Polymerase Ι

scholarly journals Structure of the 1,N2-Ethenodeoxyguanosine Adduct Opposite Cytosine in Duplex DNA: Hoogsteen Base Pairing at pH 5.2†

2008 ◽  
Vol 21 (9) ◽  
pp. 1795-1805 ◽  
Author(s):  
Ganesh Shanmugam ◽  
Ivan D. Kozekov ◽  
F. Peter Guengerich ◽  
Carmelo J. Rizzo ◽  
Michael P. Stone
Keyword(s):  
Duplex Dna ◽  
Base Pairing ◽  
Hoogsteen Base Pairing

scholarly journals Direct Measurement of Specific Interactions between Nucleic Acid Base Pairing.

2002 ◽  
Vol 59 (12) ◽  
pp. 792-799
Author(s):  
Takahiro HARADA ◽  
Takashi MIYAHARA ◽  
Naotoshi NAKASHIMA ◽  
Kazue KURIHARA
Keyword(s):  
Nucleic Acid ◽  
Direct Measurement ◽  
Specific Interactions ◽  
Base Pairing ◽  
Acid Base ◽  
Nucleic Acid Base

Parallel-stranded DNA with Hoogsteen base pairing stabilized by a trans-[Pt(NH3)2]2+ cross-link: characterization and conversion into a homodimer and a triplex

2000 ◽  
Vol 5 (5) ◽  
pp. 603-611 ◽  
Author(s):  
Jens Müller ◽  
Markus Drumm ◽  
Marc Boudvillain ◽  
Marc Leng ◽  
Einar Sletten ◽  
...  
Keyword(s):  
Base Pairing ◽  
Cross Link ◽  
Hoogsteen Base Pairing
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