Monte carlo method applied in the search for low-energy conformations of ????? structures

Biopolymers ◽  
1990 ◽  
Vol 30 (1-2) ◽  
pp. 135-150 ◽  
Author(s):  
Louis Carlacci ◽  
Kuo-Chen Chou
Keyword(s):  
Monte Carlo ◽  
Monte Carlo Method ◽  
Low Energy ◽  
Low Energy Conformations

Multispin Monte Carlo Method

2020 ◽  
Vol 20 (2) ◽  
pp. 212-220
Author(s):  
K.V. Makarova ◽  
◽  
A.G. Makarov ◽  
M.A. Padalko ◽  
V.S. Strongin ◽  
...  
Keyword(s):  
Monte Carlo ◽  
Monte Carlo Method ◽  
Ising Model ◽  
Random Walks ◽  
State Space ◽  
Low Energy ◽  
Cluster Method ◽  
Markov Random ◽  
Statistical Equivalence ◽  
Statistical Sample

The article offers a Monte Carlo cluster method for numerically calculating a statistical sample of the state space of vector models. The statistical equivalence of subsystems in the Ising model and quasi-Markov random walks can be used to increase the efficiency of the algorithm for calculating thermodynamic means. The cluster multispin approach extends the computational capabilities of the Metropolis algorithm and allows one to find configurations of the ground and low-energy states.

A FAST AND EFFECTIVE CONFORMATIONAL SEARCH METHOD FOR PEPTIDES

2003 ◽  
Vol 14 (07) ◽  
pp. 985-991 ◽  
Author(s):  
HANDAN ARKIN ◽  
TARIK ÇELIK
Keyword(s):  
Monte Carlo ◽  
Hybrid Algorithm ◽  
Energy Landscape ◽  
Search Method ◽  
Low Energy ◽  
Conformational Search ◽  
Energy Landscape Paving ◽  
Low Energy Conformations

We propose a hybrid algorithm, which combines the features of the energy landscape paving (ELP) and Monte Carlo Minimization (MCM) methods. We have tested its performance in studying the low-energy conformations of the heptapeptide deltorphin.

A Modified Valley Restrained Monte Carlo Method to Efficiently Search the Low Energy Structures of Peptides

2000 ◽  
Vol 25 (6) ◽  
pp. 385-398
Author(s):  
Chong Chul Chai ◽  
Seung Hoon Choi ◽  
Mu Shik Jhon
Keyword(s):  
Monte Carlo ◽  
Monte Carlo Method ◽  
Low Energy

Use of the High Directional Monte Carlo Method to Predict the Low Energy Structures of Melittin

1995 ◽  
Vol 15 (3) ◽  
pp. 177-187 ◽  
Author(s):  
Tae Kyoung Kim ◽  
Jeong Hyuk Yoon ◽  
Jai Kwang Shin ◽  
Mu Shik Jhon
Keyword(s):  
Monte Carlo ◽  
Monte Carlo Method ◽  
Low Energy
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