scholarly journals Energetic coupling between clustered lesions modulated by intervening triplet repeat bulge loops: Allosteric implications for DNA repair and triplet repeat expansion

Biopolymers ◽  
2009 ◽  
Vol 93 (4) ◽  
pp. 355-369 ◽  
Author(s):  
Jens Völker ◽  
G. Eric Plum ◽  
Horst H. Klump ◽  
Kenneth J. Breslauer
Keyword(s):  
Dna Repair ◽  
Repeat Expansion ◽  
Triplet Repeat ◽  
Triplet Repeat Expansion

scholarly journals DNA Repair and DNA Triplet Repeat Expansion: The Impact of Abasic Lesions on Triplet Repeat DNA Energetics

2009 ◽  
Vol 131 (26) ◽  
pp. 9354-9360 ◽  
Author(s):  
Jens Völker ◽  
G. Eric Plum ◽  
Horst H. Klump ◽  
Kenneth J. Breslauer
Keyword(s):  
Dna Repair ◽  
Repeat Expansion ◽  
Triplet Repeat ◽  
Triplet Repeat Expansion ◽  
Repeat Dna ◽  
The Impact

scholarly journals Dynamic DNA Energy Landscapes and Substrate Complexity in Triplet Repeat Expansion and DNA Repair

Biomolecules ◽  
2019 ◽  
Vol 9 (11) ◽  
pp. 709 ◽  
Author(s):  
Völker ◽  
Plum ◽  
Gindikin ◽  
Breslauer
Keyword(s):  
Dna Repair ◽  
Excision Repair ◽  
Repeat Expansion ◽  
Triplet Repeat ◽  
Energy Landscapes ◽  
Abasic Site ◽  
Triplet Repeat Expansion ◽  
Dna Repeat ◽  
Repeat Dna

DNA repeat domains implicated in DNA expansion diseases exhibit complex conformational and energy landscapes that impact biological outcomes. These landscapes include ensembles of entropically driven positional interchanges between isoenergetic, isomeric looped states referred to as rollamers. Here, we present evidence for the position-dependent impact on repeat DNA energy landscapes of an oxidative lesion (8oxodG) and of an abasic site analogue (tetrahydrofuran, F), the universal intermediate in base excision repair (BER). We demonstrate that these lesions modulate repeat bulge loop distributions within the wider dynamic rollamer triplet repeat landscapes. We showed that the presence of a lesion disrupts the energy degeneracy of the rollameric positional isomers. This lesion-induced disruption leads to the redistribution of loop isomers within the repeat loop rollamer ensemble, favoring those rollameric isomers where the lesion is positioned to be energetically least disruptive. These dynamic ensembles create a highly complex energy/conformational landscape of potential BER enzyme substrates to select for processing or to inhibit processing. We discuss the implications of such lesion-induced alterations in repeat DNA energy landscapes in the context of potential BER repair outcomes, thereby providing a biophysical basis for the intriguing in vivo observation of a linkage between pathogenic triplet repeat expansion and DNA repair.

Myotonic dystrophy type 1 (DM1): A triplet repeat expansion disorder

Gene ◽  
2013 ◽  
Vol 522 (2) ◽  
pp. 226-230 ◽  
Author(s):  
Ashok Kumar ◽  
Sarita Agarwal ◽  
Divya Agarwal ◽  
Shubha R. Phadke
Keyword(s):  
Myotonic Dystrophy ◽  
Repeat Expansion ◽  
Triplet Repeat ◽  
Myotonic Dystrophy Type 1 ◽  
Myotonic Dystrophy Type ◽  
Triplet Repeat Expansion

A Single-Surface Electrochemical Biosensor for the Detection of DNA Triplet Repeat Expansion

2006 ◽  
Vol 18 (2) ◽  
pp. 141-151 ◽  
Author(s):  
Miroslav Fojta ◽  
Petra Brázdilová ◽  
Kateřina Cahová ◽  
Petr Pečinka
Keyword(s):  
Electrochemical Biosensor ◽  
Repeat Expansion ◽  
Triplet Repeat ◽  
Triplet Repeat Expansion

Effect of Triplet Repeat Expansion on Chromatin Structure and Expression of DMPK and Neighboring Genes, SIX5 and DMWD, in Myotonic Dystrophy

2001 ◽  
Vol 74 (1-2) ◽  
pp. 281-291 ◽  
Author(s):  
Richard Frisch ◽  
Kenneth R. Singleton ◽  
Priscilla A. Moses ◽  
Iris L. Gonzalez ◽  
Paul Carango ◽  
...  
Keyword(s):  
Myotonic Dystrophy ◽  
Chromatin Structure ◽  
Repeat Expansion ◽  
Triplet Repeat ◽  
Triplet Repeat Expansion
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