scholarly journals Applying machine learning to investigate long‐term insect–plant interactions preserved on digitized herbarium specimens

2020 ◽  
Vol 8 (6) ◽  
Author(s):  
Emily K. Meineke ◽  
Carlo Tomasi ◽  
Song Yuan ◽  
Kathleen M. Pryer
Keyword(s):  
Machine Learning ◽  
Herbarium Specimens ◽  
Plant Interactions

scholarly journals Applying Machine Learning to Investigate Long Term Insect-Plant Interactions Preserved on Digitized Herbarium Specimens

2019 ◽  
Author(s):  
E.K. Meineke ◽  
C. Tomasi ◽  
S. Yuan ◽  
K.M. Pryer
Keyword(s):  
Machine Learning ◽  
Herbarium Specimens ◽  
Insect Damage ◽  
Similar Data ◽  
Plant Interactions ◽  
Plant Insect Interactions ◽  
Related Plant ◽  
Insect Interactions ◽  
Damage Type

AbstractPremise of the studyDespite the economic importance of insect damage to plants, long-term data documenting changes in insect damage (‘herbivory’) and diversity are limited. Millions of pressed plant specimens are now available online for collecting big data on plant-insect interactions during the Anthropocene.MethodsWe initiated development of machine learning methods to automate extraction of herbivory data from herbarium specimens. We trained an insect damage detector and a damage type classifier on two distantly related plant species. We experimented with 1) classifying six types of herbivory and two control categories of undamaged leaf, and 2) detecting two of these damage categories for which several hundred annotations were available.ResultsClassification models identified the correct type of herbivory 81.5% of the time. The damage classifier was accurate for categories with at least one hundred test samples. We show anecdotally that the detector works well when asked to detect two types of damage.DiscussionThe classifier and detector together are a promising first step for the automation of herbivory data collection. We describe ongoing efforts to increase the accuracy of these models to allow other researchers to extract similar data and apply them to address a variety of biological hypotheses.

scholarly journals Global soil moisture data derived through machine learning trained with in-situ measurements

2021 ◽  
Vol 8 (1) ◽  
Author(s):  
Sungmin O. ◽  
Rene Orth
Keyword(s):  
Machine Learning ◽  
Soil Moisture ◽  
Large Scale ◽  
Short Term Memory ◽  
Temporal Dynamics ◽  
Soil Moisture Data ◽  
Wide Range ◽  
Global Soil

AbstractWhile soil moisture information is essential for a wide range of hydrologic and climate applications, spatially-continuous soil moisture data is only available from satellite observations or model simulations. Here we present a global, long-term dataset of soil moisture derived through machine learning trained with in-situ measurements, SoMo.ml. We train a Long Short-Term Memory (LSTM) model to extrapolate daily soil moisture dynamics in space and in time, based on in-situ data collected from more than 1,000 stations across the globe. SoMo.ml provides multi-layer soil moisture data (0–10 cm, 10–30 cm, and 30–50 cm) at 0.25° spatial and daily temporal resolution over the period 2000–2019. The performance of the resulting dataset is evaluated through cross validation and inter-comparison with existing soil moisture datasets. SoMo.ml performs especially well in terms of temporal dynamics, making it particularly useful for applications requiring time-varying soil moisture, such as anomaly detection and memory analyses. SoMo.ml complements the existing suite of modelled and satellite-based datasets given its distinct derivation, to support large-scale hydrological, meteorological, and ecological analyses.

scholarly journals Evaluating Machine Learning and Geostatistical Methods for Spatial Gap-filling of Monthly ESA CCI Soil Moisture in China

2021 ◽  
Vol 13 (14) ◽  
pp. 2848
Author(s):  
Hao Sun ◽  
Qian Xu
Keyword(s):  
Machine Learning ◽  
Soil Moisture ◽  
Water Resource Management ◽  
Large Scale ◽  
Gap Filling ◽  
Spatial Continuity ◽  
Study Results ◽  
Data Gaps

Obtaining large-scale, long-term, and spatial continuous soil moisture (SM) data is crucial for climate change, hydrology, and water resource management, etc. ESA CCI SM is such a large-scale and long-term SM (longer than 40 years until now). However, there exist data gaps, especially for the area of China, due to the limitations in remote sensing of SM such as complex topography, human-induced radio frequency interference (RFI), and vegetation disturbances, etc. The data gaps make the CCI SM data cannot achieve spatial continuity, which entails the study of gap-filling methods. In order to develop suitable methods to fill the gaps of CCI SM in the whole area of China, we compared typical Machine Learning (ML) methods, including Random Forest method (RF), Feedforward Neural Network method (FNN), and Generalized Linear Model (GLM) with a geostatistical method, i.e., Ordinary Kriging (OK) in this study. More than 30 years of passive–active combined CCI SM from 1982 to 2018 and other biophysical variables such as Normalized Difference Vegetation Index (NDVI), precipitation, air temperature, Digital Elevation Model (DEM), soil type, and in situ SM from International Soil Moisture Network (ISMN) were utilized in this study. Results indicated that: 1) the data gap of CCI SM is frequent in China, which is found not only in cold seasons and areas but also in warm seasons and areas. The ratio of gap pixel numbers to the whole pixel numbers can be greater than 80%, and its average is around 40%. 2) ML methods can fill the gaps of CCI SM all up. Among the ML methods, RF had the best performance in fitting the relationship between CCI SM and biophysical variables. 3) Over simulated gap areas, RF had a comparable performance with OK, and they outperformed the FNN and GLM methods greatly. 4) Over in situ SM networks, RF achieved better performance than the OK method. 5) We also explored various strategies for gap-filling CCI SM. Results demonstrated that the strategy of constructing a monthly model with one RF for simulating monthly average SM and another RF for simulating monthly SM disturbance achieved the best performance. Such strategy combining with the ML method such as the RF is suggested in this study for filling the gaps of CCI SM in China.

scholarly journals Psychiatric comorbid disorders of cognition: a machine learning approach using 1175 UK Biobank participants

2020 ◽  
Vol 23 (4) ◽  
pp. 140-145
Author(s):  
Chenlu Li ◽  
Delia A Gheorghe ◽  
John E Gallacher ◽  
Sarah Bauermeister
Keyword(s):  
Machine Learning ◽  
Cognitive Decline ◽  
Psychiatric Disorders ◽  
Characteristic Curve ◽  
Area Under The Curve ◽  
Imaging Study ◽  
Cognitive Change ◽  
Poor Mental Health ◽  
Uk Biobank

BackgroundConceptualising comorbidity is complex and the term is used variously. Here, it is the coexistence of two or more diagnoses which might be defined as ‘chronic’ and, although they may be pathologically related, they may also act independently. Of interest here is the comorbidity of common psychiatric disorders and impaired cognition.ObjectivesTo examine whether anxiety and/or depression are/is important longitudinal predictors of cognitive change.MethodsUK Biobank participants used at three time points (n=502 664): baseline, first follow-up (n=20 257) and first imaging study (n=40 199). Participants with no missing data were 1175 participants aged 40–70 years, 41% women. Machine learning was applied and the main outcome measure of reaction time intraindividual variability (cognition) was used.FindingsUsing the area under the receiver operating characteristic curve, the anxiety model achieves the best performance with an area under the curve (AUC) of 0.68, followed by the depression model with an AUC of 0.63. The cardiovascular and diabetes model, and the covariates model have weaker performance in predicting cognition, with an AUC of 0.60 and 0.56, respectively.ConclusionsOutcomes suggest that psychiatric disorders are more important comorbidities of long-term cognitive change than diabetes and cardiovascular disease, and demographic factors. Findings suggest that psychiatric disorders (anxiety and depression) may have a deleterious effect on long-term cognition and should be considered as an important comorbid disorder of cognitive decline.Clinical implicationsImportant predictive effects of poor mental health on longitudinal cognitive decline should be considered in secondary and also primary care.

scholarly journals International agricultural trade forecasting using machine learning

Data & Policy ◽  
2021 ◽  
Vol 3 ◽  
Author(s):  
Munisamy Gopinath ◽  
Feras A. Batarseh ◽  
Jayson Beckman ◽  
Ajay Kulkarni ◽  
Sei Jeong
Keyword(s):  
Neural Network ◽  
Machine Learning ◽  
Agricultural Trade ◽  
Supervised Machine Learning ◽  
Trade Patterns ◽  
Subjective Assessments ◽  
History Of ◽  
Network Approaches ◽  
Traditional Approaches

Abstract Focusing on seven major agricultural commodities with a long history of trade, this study employs data-driven analytics to decipher patterns of trade, namely using supervised machine learning (ML), as well as neural networks. The supervised ML and neural network techniques are trained on data until 2010 and 2014, respectively. Results show the high relevance of ML models to forecasting trade patterns in near- and long-term relative to traditional approaches, which are often subjective assessments or time-series projections. While supervised ML techniques quantified key economic factors underlying agricultural trade flows, neural network approaches provide better fits over the long term.

Long-term Cholesterol Risk Prediction using Machine Learning Techniques in ELSA Database

2021 ◽  
Author(s):  
Nikos Fazakis ◽  
Elias Dritsas ◽  
Otilia Kocsis ◽  
Nikos Fakotakis ◽  
Konstantinos Moustakas
Keyword(s):  
Machine Learning ◽  
Risk Prediction ◽  
Machine Learning Techniques ◽  
Learning Techniques

Exploring long-term trends in marine ecosystems: machine-learning approaches to global change biology

2021 ◽  
Author(s):  
Domenico D'Alelio ◽  
Salvatore Rampone ◽  
Luigi Maria Cusano ◽  
Nadia Sanseverino ◽  
Luca Russo ◽  
...  
Keyword(s):  
Machine Learning ◽  
Global Change ◽  
Marine Ecosystems ◽  
Learning Approaches ◽  
Global Change Biology ◽  
Long Term Trends

scholarly journals Long-term streamflow forecasting for the Cascade Reservoir System of Han River using SWAT with CFS output

2018 ◽  
Vol 50 (2) ◽  
pp. 655-671
Author(s):  
Tian Liu ◽  
Yuanfang Chen ◽  
Binquan Li ◽  
Yiming Hu ◽  
Hui Qiu ◽  
...  
Keyword(s):  
Machine Learning ◽  
Assessment Tool ◽  
Flow Simulation ◽  
Machine Learning Algorithms ◽  
Support Vector ◽  
Streamflow Forecasting ◽  
Distribution Models ◽  
Han River ◽  
Reservoir System

Abstract Due to the large uncertainties of long-term precipitation prediction and reservoir operation, it is difficult to forecast long-term streamflow for large basins with cascade reservoirs. In this paper, a framework coupling the original Climate Forecasting System (CFS) precipitation with the Soil and Water Assessment Tool (SWAT) was proposed to forecast the nine-month streamflow for the Cascade Reservoir System of Han River (CRSHR) including Shiquan, Ankang and Danjiangkou reservoirs. First, CFS precipitation was tested against the observation and post-processed through two machine learning algorithms, random forest and support vector regression. Results showed the correlation coefficients between the monthly areal CFS precipitation (post-processed) and observation were 0.91–0.96, confirming that CFS precipitation post-processing using machine learning was not affected by the extended forecast period. Additionally, two precipitation spatio-temporal distribution models, original CFS and similar historical observation, were adopted to disaggregate the processed monthly areal CFS precipitation to daily subbasin-scale precipitation. Based on the reservoir restoring flow, the regional SWAT was calibrated for CRSHR. The Nash–Sutcliffe efficiencies for three reservoirs flow simulation were 0.86, 0.88 and 0.84, respectively, meeting the accuracy requirement. The experimental forecast showed that for three reservoirs, long-term streamflow forecast with similar historical observed distribution was more accurate than that with original CFS.

Sign in / Sign up

Export Citation Format

Share Document