scholarly journals Control of the Conductance of Engineered Protein Nanopores through Concerted Loop Motions

2014 ◽  
Vol 53 (23) ◽  
pp. 5897-5902 ◽  
Author(s):  
Tiandi Zhuang ◽  
Lukas K. Tamm
Keyword(s):  
Loop Motions

scholarly journals Dynamic design: manipulation of millisecond timescale motions on the energy landscape of cyclophilin A

2020 ◽  
Vol 11 (10) ◽  
pp. 2670-2680 ◽  
Author(s):  
Jordi Juárez-Jiménez ◽  
Arun A. Gupta ◽  
Gogulan Karunanithy ◽  
Antonia S. J. S. Mey ◽  
Charis Georgiou ◽  
...  
Keyword(s):  
Large Scale ◽  
Energy Landscape ◽  
Molecular Simulations ◽  
Cyclophilin A ◽  
Dynamic Design ◽  
Loop Motions

Molecular simulations were used to design large scale loop motions in the enzyme cyclophilin A and NMR and biophysical methods were employed to validate the models.

scholarly journals Loop Motions of Triosephosphate Isomerase Observed with Elastic Networks†

Biochemistry ◽  
2006 ◽  
Vol 45 (4) ◽  
pp. 1173-1182 ◽  
Author(s):  
Ozge Kurkcuoglu ◽  
Robert L. Jernigan ◽  
Pemra Doruker
Keyword(s):  
Triosephosphate Isomerase ◽  
Elastic Networks ◽  
Loop Motions

scholarly journals Coupling between Catalytic Loop Motions and Enzyme Global Dynamics

2012 ◽  
Vol 8 (9) ◽  
pp. e1002705 ◽  
Author(s):  
Zeynep Kurkcuoglu ◽  
Ahmet Bakan ◽  
Duygu Kocaman ◽  
Ivet Bahar ◽  
Pemra Doruker
Keyword(s):  
Global Dynamics ◽  
Catalytic Loop ◽  
Loop Motions

scholarly journals Loop Motions Important to Product Expulsion in theThermobifida fuscaGlycoside Hydrolase Family 6 Cellobiohydrolase from Structural and Computational Studies

2013 ◽  
Vol 288 (46) ◽  
pp. 33107-33117 ◽  
Author(s):  
Miao Wu ◽  
Lintao Bu ◽  
Thu V. Vuong ◽  
David B. Wilson ◽  
Michael F. Crowley ◽  
...  
Keyword(s):  
Computational Studies ◽  
Loop Motions ◽  
Hydrolase Family

Control of the Conductance of Engineered Protein Nanopores through Concerted Loop Motions

2014 ◽  
Vol 126 (23) ◽  
pp. 6007-6012
Author(s):  
Tiandi Zhuang ◽  
Lukas K. Tamm
Keyword(s):  
Loop Motions

Significant Loop Motions in the SsoPTP Protein Tyrosine Phosphatase Allow for Dual General Acid Functionality

Biochemistry ◽  
2021 ◽  
Author(s):  
Justin Pinkston ◽  
Jihye Jo ◽  
Keith J. Olsen ◽  
Drake Comer ◽  
Charsti A. Glaittli ◽  
...  
Keyword(s):  
Protein Tyrosine Phosphatase ◽  
Tyrosine Phosphatase ◽  
Protein Tyrosine ◽  
General Acid ◽  
Loop Motions

scholarly journals Rate-Limiting Domain and Loop Motions in Arginine Kinase

Biochemistry ◽  
2011 ◽  
Vol 50 (19) ◽  
pp. 4011-4018 ◽  
Author(s):  
Omar Davulcu ◽  
Jack J. Skalicky ◽  
Michael S. Chapman
Keyword(s):  
Arginine Kinase ◽  
Loop Motions ◽  
Rate Limiting
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