Backbone Carbonyl Group Basicities Are Related to Gas-Phase Fragmentation of Peptides and Protein Folding

2007 ◽  
Vol 46 (9) ◽  
pp. 1481-1484 ◽  
Author(s):  
Mikhail M. Savitski ◽  
Frank Kjeldsen ◽  
Michael L. Nielsen ◽  
Sergiy O. Garbuzynskiy ◽  
Oxana V. Galzitskaya ◽  
...  
Keyword(s):  
Protein Folding ◽  
Gas Phase ◽  
Carbonyl Group ◽  
Backbone Carbonyl ◽  
Gas Phase Fragmentation

Backbone Carbonyl Group Basicities Are Related to Gas-Phase Fragmentation of Peptides and Protein Folding

2007 ◽  
Vol 119 (9) ◽  
pp. 1503-1506
Author(s):  
Mikhail M. Savitski ◽  
Frank Kjeldsen ◽  
Michael L. Nielsen ◽  
Sergiy O. Garbuzynskiy ◽  
Oxana V. Galzitskaya ◽  
...  
Keyword(s):  
Protein Folding ◽  
Gas Phase ◽  
Carbonyl Group ◽  
Backbone Carbonyl ◽  
Gas Phase Fragmentation

Graph theory-based reaction pathway searches and DFT calculations for the mechanism studies of free radical-initiated peptide sequencing mass spectrometry (FRIPS MS): a model gas-phase reaction of GGR tri-peptide

2020 ◽  
Vol 22 (9) ◽  
pp. 5057-5069 ◽  
Author(s):  
Jae-ung Lee ◽  
Yeonjoon Kim ◽  
Woo Youn Kim ◽  
Han Bin Oh
Keyword(s):  
Graph Theory ◽  
Dft Calculations ◽  
Gas Phase ◽  
Density Functional ◽  
Reaction Pathway ◽  
Peptide Sequencing ◽  
Phase Reaction ◽  
Functional Theory ◽  
Fragmentation Mechanisms ◽  
Gas Phase Fragmentation

A new approach for elucidating gas-phase fragmentation mechanisms is proposed: graph theory-based reaction pathway searches (ACE-Reaction program) and density functional theory (DFT) calculations.

scholarly journals Two competitive INC-mediated reactions in the gas-phase fragmentation of protonated indolyl benzo[b]carbazoles

2016 ◽  
Vol 30 ◽  
pp. 20-23 ◽  
Author(s):  
Xiaoping Zhang ◽  
Kezhi Jiang ◽  
Jingfeng Zou ◽  
Zuguang Li ◽  
Mawrong Lee
Keyword(s):  
Gas Phase ◽  
Gas Phase Fragmentation

Gas-Phase Fragmentation of Polyoxotungstate Anions

2009 ◽  
Vol 48 (2) ◽  
pp. 598-606 ◽  
Author(s):  
Michelle T. Ma ◽  
Tom Waters ◽  
Karin Beyer ◽  
Rosemary Palamarczuk ◽  
Peter J. S. Richardt ◽  
...  
Keyword(s):  
Gas Phase ◽  
Gas Phase Fragmentation

scholarly journals Functional Group Selective Derivatization and Gas-Phase Fragmentation Reactions of Plasmalogen Glycerophospholipids

2013 ◽  
Vol 2 (Special_Issue) ◽  
pp. S0015-S0015 ◽  
Author(s):  
Cassie J. Fhaner ◽  
Sichang Liu ◽  
Xiao Zhou ◽  
Gavin E. Reid
Keyword(s):  
Gas Phase ◽  
Functional Group ◽  
Fragmentation Reactions ◽  
Gas Phase Fragmentation

scholarly journals Constraining nucleation, condensation, and chemistry in oxidation flow reactors using size-distribution measurements and aerosol microphysical modelling

2018 ◽  
Author(s):  
Anna L. Hodshire ◽  
Brett B. Palm ◽  
M. Lizabeth Alexander ◽  
Qijing Bian ◽  
Pedro Campuzano-Jost ◽  
...  
Keyword(s):  
Size Distribution ◽  
Gas Phase ◽  
Organic Compounds ◽  
Rate Constants ◽  
Accommodation Coefficient ◽  
Uptake Coefficient ◽  
Flow Reactors ◽  
Reactive Uptake Coefficient ◽  
Fragmentation Reactions ◽  
Gas Phase Fragmentation

Abstract. Oxidation flow reactors (OFRs) allow the concentration of a given atmospheric oxidant to be increased beyond ambient levels in order to study secondary organic aerosol (SOA) formation and aging over varying periods of equivalent aging by that oxidant. Previous studies have used these reactors to determine the bulk OA mass and chemical evolution. To our knowledge, no OFR study has focused on the interpretation of the evolving aerosol size distributions. In this study, we use size distribution measurements of the OFR and an aerosol microphysics model to learn about size-dependent processes in the OFR. Specifically, we use OFR exposures between 0.09–0.9 equivalent days of OH aging from the 2011 BEACHON-RoMBAS and the GoAmazon2014/5 field campaigns. We use simulations in the TOMAS (TwO-Moment Aerosol Sectional) microphysics box model to constrain the following parameters in the OFR: (1) the rate constant of gas-phase functionalization reactions of organic compounds with OH, (2) the rate constant of gas-phase fragmentation reactions of organic compounds with OH, (3) the reactive uptake coefficient for heterogeneous fragmentation reactions with OH, (4) the nucleation rate constants for three different nucleation schemes, and (5) an effective accommodation coefficient that accounts for possible particle diffusion limitations of particles larger than 60 nm in diameter. We find the best model-to-measurement agreement when the accommodation coefficient of the larger particles (Dp > 60 nm) was 0.1 or lower (with an accommodation coefficient of 1 for smaller particles), which suggests a diffusion limitation in the larger particles. When using these low accommodation-coefficient values, the model agrees with measurements when using a published H2SO4-organics nucleation mechanism and previously published values of rate constants for gas-phase oxidation reactions. Further, gas-phase fragmentation was found to have a significant impact upon the size distribution, and including fragmentation was necessary for accurately simulating the distributions in the OFR. The model was insensitive to the value of the reactive uptake coefficient on these aging timescales. Monoterpenes and isoprene could explain 24–95 % of the observed change in total volume of aerosol in the OFR, with ambient semivolatile and intermediate-volatility organic compounds (S/IVOCs) appearing to explain the remainder of the change in total volume. These results provide support to the mass-based findings of previous OFR studies, give insight to important size-distribution dynamics in the OFR, and enable the design of future OFR studies focused on new particle formation and/or microphysical processes.

Mass Spectral Similarity Networking and Gas-Phase Fragmentation Reactions in the Structural Analysis of Flavonoid Glycoconjugates

2019 ◽  
Vol 91 (16) ◽  
pp. 10413-10423 ◽  
Author(s):  
Alan Cesar Pilon ◽  
Haiwei Gu ◽  
Daniel Raftery ◽  
Vanderlan da Silva Bolzani ◽  
Norberto Peporine Lopes ◽  
...  
Keyword(s):  
Structural Analysis ◽  
Gas Phase ◽  
Spectral Similarity ◽  
Mass Spectral ◽  
Fragmentation Reactions ◽  
Gas Phase Fragmentation

scholarly journals Gas-Phase Fragmentation of Cyclic Oligosaccharides in Tandem Mass Spectrometry

Molecules ◽  
2019 ◽  
Vol 24 (12) ◽  
pp. 2226 ◽  
Author(s):  
Alexander O. Chizhov ◽  
Yury E. Tsvetkov ◽  
Nikolay E. Nifantiev
Keyword(s):  
Mass Spectrometry ◽  
Tandem Mass Spectrometry ◽  
Gas Phase ◽  
Structure Elucidation ◽  
Mass Spectra ◽  
Food Additives ◽  
Tandem Mass ◽  
Modern Mass ◽  
Gas Phase Fragmentation ◽  
Different Sources

Modern mass spectrometry, including electrospray and MALDI, is applied for analysis and structure elucidation of carbohydrates. Cyclic oligosaccharides isolated from different sources (bacteria and plants) have been known for decades and some of them (cyclodextrins and their derivatives) are widely used in drug design, as food additives, in the construction of nanomaterials, etc. The peculiarities of the first- and second-order mass spectra of cyclic oligosaccharides (natural, synthetic and their derivatives and modifications: cyclodextrins, cycloglucans, cyclofructans, cyclooligoglucosamines, etc.) are discussed in this minireview.

Gas-phase fragmentation of metal adducts of alkali-metal oxalate salts

2014 ◽  
Vol 49 (3) ◽  
pp. 195-200 ◽  
Author(s):  
Robert D. Hale ◽  
Chang-Ching Chan ◽  
Carl S. Weisbecker ◽  
Athula B. Attygalle
Keyword(s):  
Alkali Metal ◽  
Gas Phase ◽  
Metal Oxalate ◽  
Metal Adducts ◽  
Gas Phase Fragmentation
Sign in / Sign up

Export Citation Format

Share Document