Modulating Self-Assembly of DNA Crystals with Rationally Designed Agents

2018 ◽  
Vol 130 (50) ◽  
pp. 16767-16770 ◽  
Author(s):  
Jiemin Zhao ◽  
Yue Zhao ◽  
Zhe Li ◽  
Yong Wang ◽  
Ruojie Sha ◽  
...  
Keyword(s):  
2019 ◽  
Vol 21 (1) ◽  
pp. 469-493 ◽  
Author(s):  
Dominic Scalise ◽  
Rebecca Schulman

In recent years, a diverse set of mechanisms have been developed that allow DNA strands with specific sequences to sense information in their environment and to control material assembly, disassembly, and reconfiguration. These sequences could serve as the inputs and outputs for DNA computing circuits, enabling DNA circuits to act as chemical information processors to program complex behavior in chemical and material systems. This review describes processes that can be sensed and controlled within such a paradigm. Specifically, there are interfaces that can release strands of DNA in response to chemical signals, wavelengths of light, pH, or electrical signals, as well as DNA strands that can direct the self-assembly and dynamic reconfiguration of DNA nanostructures, regulate particle assemblies, control encapsulation, and manipulate materials including DNA crystals, hydrogels, and vesicles. These interfaces have the potential to enable chemical circuits to exert algorithmic control over responsive materials, which may ultimately lead to the development of materials that grow, heal, and interact dynamically with their environments.


2013 ◽  
Vol 58 (15) ◽  
pp. 1450-1455
Author(s):  
ChangLong LIU ◽  
ZhiYong SHEN ◽  
Ming ZHOU ◽  
LiZhou ZHUANG ◽  
George AMOAKO ◽  
...  

Nature ◽  
10.1038/28998 ◽  
1998 ◽  
Vol 394 (6693) ◽  
pp. 539-544 ◽  
Author(s):  
Erik Winfree ◽  
Furong Liu ◽  
Lisa A. Wenzler ◽  
Nadrian C. Seeman

2018 ◽  
Vol 57 (50) ◽  
pp. 16529-16532 ◽  
Author(s):  
Jiemin Zhao ◽  
Yue Zhao ◽  
Zhe Li ◽  
Yong Wang ◽  
Ruojie Sha ◽  
...  
Keyword(s):  

2017 ◽  
Vol 24 (11) ◽  
pp. 1401-1406.e2 ◽  
Author(s):  
Carina Hernandez ◽  
Jens J. Birktoft ◽  
Yoel P. Ohayon ◽  
Arun Richard Chandrasekaran ◽  
Hatem Abdallah ◽  
...  

2018 ◽  
Author(s):  
Ryan A. Brady ◽  
Nicholas J. Brooks ◽  
Vito Foderà ◽  
Pietro Cicuta ◽  
Lorenzo Di Michele

<div> <div> <div> <p>The reliable preparation of functional, ordered, nanostructured frameworks would be a game changer for many emerging technologies, from energy storage to nanomedicine. Underpinned by the excellent molecular recognition of nucleic acids, along with their facile synthesis and breadth of available functionalizations, DNA Nanotechnology is widely acknowledged as a prime route for the rational design of nanostructured materials. Yet, the preparation of crystalline DNA frameworks with programmable structure and functionality remains a challenge. Here we demonstrate the potential of simple amphiphilic DNA motifs, dubbed C-stars, as a versatile platform for the design of programmable DNA crystals. In contrast to all-DNA materials, in which structure depends on the precise molecular details of individual building blocks, the self-assembly of C-stars is controlled uniquely by their topology and symmetry. Exploiting this robust self-assembly principle we design a range of topologically identical, but structurally and chemically distinct C-stars that following a one-pot reaction self- assemble into highly porous, functional, crystalline frameworks. Simple design variations allow us to fine-tune the lattice parameter and thus control the partitioning of macromolecules within the frameworks, embed responsive mo- tifs that can induce isothermal disassembly, and include chemical moieties to capture target proteins specifically and reversibly.</p></div> </div> </div>


2018 ◽  
Author(s):  
Ryan A. Brady ◽  
Nicholas J. Brooks ◽  
Vito Foderà ◽  
Pietro Cicuta ◽  
Lorenzo Di Michele

<div> <div> <div> <p>The reliable preparation of functional, ordered, nanostructured frameworks would be a game changer for many emerging technologies, from energy storage to nanomedicine. Underpinned by the excellent molecular recognition of nucleic acids, along with their facile synthesis and breadth of available functionalizations, DNA Nanotechnology is widely acknowledged as a prime route for the rational design of nanostructured materials. Yet, the preparation of crystalline DNA frameworks with programmable structure and functionality remains a challenge. Here we demonstrate the potential of simple amphiphilic DNA motifs, dubbed C-stars, as a versatile platform for the design of programmable DNA crystals. In contrast to all-DNA materials, in which structure depends on the precise molecular details of individual building blocks, the self-assembly of C-stars is controlled uniquely by their topology and symmetry. Exploiting this robust self-assembly principle we design a range of topologically identical, but structurally and chemically distinct C-stars that following a one-pot reaction self- assemble into highly porous, functional, crystalline frameworks. Simple design variations allow us to fine-tune the lattice parameter and thus control the partitioning of macromolecules within the frameworks, embed responsive mo- tifs that can induce isothermal disassembly, and include chemical moieties to capture target proteins specifically and reversibly.</p></div> </div> </div>


2004 ◽  
Vol 49 (9) ◽  
pp. 879-882
Author(s):  
Cheng Song ◽  
Yaqing Chen ◽  
Shuai Wei ◽  
Xiaozeng You ◽  
Shoujun Xiao

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