Genome-wide supported psychosis risk variant in ZNF804A gene and impact on cortico-limbic WM integrity in schizophrenia

2012 ◽  
Vol 159B (3) ◽  
pp. 255-262 ◽  
Author(s):  
Carissa Nadia Kuswanto ◽  
Puay-San Woon ◽  
Xue Bin Zheng ◽  
Anqi Qiu ◽  
Yih-Yian Sitoh ◽  
...  
2010 ◽  
Vol 16 (4) ◽  
pp. 462-470 ◽  
Author(s):  
H Walter ◽  
K Schnell ◽  
S Erk ◽  
C Arnold ◽  
P Kirsch ◽  
...  

2013 ◽  
Vol 39 (5) ◽  
pp. 1196-1205 ◽  
Author(s):  
Sebastian Mohnke ◽  
Susanne Erk ◽  
Knut Schnell ◽  
Claudia Schütz ◽  
Nina Romanczuk-Seiferth ◽  
...  

2017 ◽  
Vol 81 (10) ◽  
pp. S367
Author(s):  
Janitza Montalvo-Ortiz ◽  
Hang Zhou ◽  
Lindsay Farrer ◽  
Henry Kranzler ◽  
Joel Gelernter

2014 ◽  
Vol 36 (1) ◽  
pp. 378-390 ◽  
Author(s):  
Heidelore Raum ◽  
Bruno Dietsche ◽  
Arne Nagels ◽  
Stephanie H. Witt ◽  
Marcella Rietschel ◽  
...  

Author(s):  
Xiaoming Lu ◽  
Xiaoting Chen ◽  
Carmy Forney ◽  
Omer Donmez ◽  
Daniel Miller ◽  
...  

AbstractGenome-wide association studies of Systemic Lupus Erythematosus (SLE) nominate 3,073 genetic variants at 91 risk loci. To systematically screen these variants for allelic transcriptional enhancer activity, we constructed a massively parallel reporter assay (MPRA) library comprising 12,396 DNA oligonucleotides containing the genomic context around every allele of each SLE variant. Transfection into EBV-infected B cells revealed 482 variants with enhancer activity, with 51 variants showing genotype-dependent (allelic) enhancer activity at 27 risk loci. In-depth analysis of allelic transcription factor (TF) binding at and around these 51 variants identified one class of TFs whose DNA-binding motif tends to be directly altered by the risk variant and a second, larger class of TFs that also bind allelically but do not have their motifs directly altered by the variant. Collectively, our approach provides a blueprint for the discovery of allelic gene regulation at risk loci for any disease and offers insight into the transcriptional regulatory mechanisms underlying SLE.


2020 ◽  
Author(s):  
Mary Ann A. DeMichele-Sweet ◽  
Lambertus Klei ◽  
Byron Creese ◽  
Elise A. Weamer ◽  
Lora McClain ◽  
...  

Psychotic symptoms, defined as the occurrence of delusions or hallucinations, are frequent in Alzheimer disease (AD with psychosis, AD+P), affecting ~ 40% to 60% of individuals with AD. AD+P identifies a subgroup of AD patients with poor outcomes. The strongest clinical predictor of AD+P is a greater degree of cognitive impairment than in AD subjects without psychosis (AD-P). Other frequently replicated correlates of AD+P include elevated depressive symptoms. Although the estimated heritability of psychosis in AD is 61%, the underlying genetic sources of this risk are not known. We report a genome-wide meta-analysis of 12,317 AD subjects, with and without psychosis. Results showed common genetic variation accounted for a significant portion of heritability. Two loci, one in the gene ENPP6 (best SNP rs9994623, O.R. (95%CI) 1.16 (1.10, 1.22), p=1.26x10-8) and one spanning the 3-prime-UTR of an alternatively spliced transcript of SUMF1 (best SNP rs201109606, O.R. 0.65 (0.56-0.76), p=3.24x10-8), had genome-wide significant associations with the risk of psychosis in AD. Psychosis risk in AD demonstrated negative genetic correlations with cognitive and educational attainment and positive genetic correlation with depressive symptoms. We had previously observed a negative genetic correlation with schizophrenia, instead we now found a stronger negative correlation with the related phenotype of bipolar disorder. Psychosis risk in AD was not genetically correlated with AD or other neurodegenerative diseases. These findings provide the first unbiased identification of the association of psychosis in AD with common genetic variation and provide insights into its genetic architecture. Study of the genetic mechanisms underlying the associations of loci in ENPP6 and SUMF1 with psychosis in AD are warranted.


Gut ◽  
2019 ◽  
Vol 68 (5) ◽  
pp. 854-865 ◽  
Author(s):  
Clemens Schafmayer ◽  
James William Harrison ◽  
Stephan Buch ◽  
Christina Lange ◽  
Matthias C Reichert ◽  
...  

ObjectiveDiverticular disease is a common complex disorder characterised by mucosal outpouchings of the colonic wall that manifests through complications such as diverticulitis, perforation and bleeding. We report the to date largest genome-wide association study (GWAS) to identify genetic risk factors for diverticular disease.DesignDiscovery GWAS analysis was performed on UK Biobank imputed genotypes using 31 964 cases and 419 135 controls of European descent. Associations were replicated in a European sample of 3893 cases and 2829 diverticula-free controls and evaluated for risk contribution to diverticulitis and uncomplicated diverticulosis. Transcripts at top 20 replicating loci were analysed by real-time quatitative PCR in preparations of the mucosal, submucosal and muscular layer of colon. The localisation of expressed protein at selected loci was investigated by immunohistochemistry.ResultsWe discovered 48 risk loci, of which 12 are novel, with genome-wide significance and consistent OR in the replication sample. Nominal replication (p<0.05) was observed for 27 loci, and additional 8 in meta-analysis with a population-based cohort. The most significant novel risk variant rs9960286 is located near CTAGE1 with a p value of 2.3×10−10 and 0.002 (ORallelic=1.14 (95% CI 1.05 to 1.24)) in the replication analysis. Four loci showed stronger effects for diverticulitis, PHGR1 (OR 1.32, 95% CI 1.12 to 1.56), FAM155A-2 (OR 1.21, 95% CI 1.04 to 1.42), CALCB (OR 1.17, 95% CI 1.03 to 1.33) and S100A10 (OR 1.17, 95% CI 1.03 to 1.33).ConclusionIn silico analyses point to diverticulosis primarily as a disorder of intestinal neuromuscular function and of impaired connective fibre support, while an additional diverticulitis risk might be conferred by epithelial dysfunction.


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