Detecting Native Protein Folds among Large Decoy Sets with the OPLS All-Atom Potential and the Surface Generalized Born Solvent Model

2002 ◽  
pp. 459-486 ◽  
Author(s):  
Anders Wallqvist ◽  
Emilio Gallicchio ◽  
Anthony K. Felts ◽  
Ronald M. Levy
Keyword(s):  
Native Protein ◽  
Generalized Born ◽  
Protein Folds ◽  
Solvent Model ◽  
Atom Potential

Computational protein design with a generalized born solvent model: Application to asparaginyl-tRNA synthetase

2011 ◽  
Vol 79 (12) ◽  
pp. 3448-3468 ◽  
Author(s):  
Savvas Polydorides ◽  
Najette Amara ◽  
Caroline Aubard ◽  
Pierre Plateau ◽  
Thomas Simonson ◽  
...  
Keyword(s):  
Protein Design ◽  
Trna Synthetase ◽  
Computational Protein Design ◽  
Model Application ◽  
Generalized Born ◽  
Solvent Model

A 30-residue fragment of the carp granulin-1 protein folds into a stack of two β-hairpins similar to that found in the native protein

1999 ◽  
Vol 53 (5) ◽  
pp. 590-597 ◽  
Author(s):  
W.F. Vranken ◽  
Z.G. Chen ◽  
P. Xu ◽  
S. James ◽  
H.P.J. Bennett ◽  
...  
Keyword(s):  
Native Protein ◽  
Protein Folds
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