Identification of Novel Integral Membrane Proteins of the Nuclear Envelope with Potential Disease Links Using Subtractive Proteomics

2008 ◽  
pp. 63-80 ◽  
Author(s):  
Eric C. Schirmer ◽  
Laurence Florens ◽  
Tinglu Guan ◽  
John R. Yates ◽  
Larry Gerace
Keyword(s):  
Membrane Proteins ◽  
Nuclear Envelope ◽  
Integral Membrane Proteins ◽  
Subtractive Proteomics

scholarly journals Integral Membrane Proteins of the Nuclear Envelope Are Dispersed throughout the Endoplasmic Reticulum during Mitosis

1997 ◽  
Vol 137 (6) ◽  
pp. 1199-1210 ◽  
Author(s):  
Li Yang ◽  
Tinglu Guan ◽  
Larry Gerace
Keyword(s):  
Membrane Proteins ◽  
Nuclear Envelope ◽  
Nuclear Membrane ◽  
Mammalian Cells ◽  
Polyclonal Antibodies ◽  
Integral Membrane Proteins ◽  
Immunogold Electron Microscopy ◽  
Nuclear Pore ◽  
Nuclear Lamins ◽  
Nuclear Membranes

We have analyzed the fate of several integral membrane proteins of the nuclear envelope during mitosis in cultured mammalian cells to determine whether nuclear membrane proteins are present in a vesicle population distinct from bulk ER membranes after mitotic nuclear envelope disassembly or are dispersed throughout the ER. Using immunofluorescence staining and confocal microscopy, we compared the localization of two inner nuclear membrane proteins (laminaassociated polypeptides 1 and 2 [LAP1 and LAP2]) and a nuclear pore membrane protein (gp210) to the distribution of bulk ER membranes, which was determined with lipid dyes (DiOC6 and R6) and polyclonal antibodies. We found that at the resolution of this technique, the three nuclear envelope markers become completely dispersed throughout ER membranes during mitosis. In agreement with these results, we detected LAP1 in most membranes containing ER markers by immunogold electron microscopy of metaphase cells. Together, these findings indicate that nuclear membranes lose their identity as a subcompartment of the ER during mitosis. We found that nuclear lamins begin to reassemble around chromosomes at the end of mitosis at the same time as LAP1 and LAP2 and propose that reassembly of the nuclear envelope at the end of mitosis involves sorting of integral membrane proteins to chromosome surfaces by binding interactions with lamins and chromatin.

scholarly journals High-Throughput Identification of Nuclear Envelope Protein Interactions in Schizosaccharomyces pombe Using an Arrayed Membrane Yeast-Two Hybrid Library

2020 ◽  
Vol 10 (12) ◽  
pp. 4649-4663 ◽  
Author(s):  
Joseph M. Varberg ◽  
Jennifer M. Gardner ◽  
Scott McCroskey ◽  
Snehabala Saravanan ◽  
William D. Bradford ◽  
...  
Keyword(s):  
Membrane Proteins ◽  
Nuclear Envelope ◽  
Schizosaccharomyces Pombe ◽  
High Throughput ◽  
Protein Interactions ◽  
Transmembrane Protein ◽  
Integral Membrane Proteins ◽  
Model Organisms ◽  
Yeast Two Hybrid ◽  
Two Hybrid

The nuclear envelope (NE) contains a specialized set of integral membrane proteins that maintain nuclear shape and integrity and influence chromatin organization and gene expression. Advances in proteomics techniques and studies in model organisms have identified hundreds of proteins that localize to the NE. However, the function of many of these proteins at the NE remains unclear, in part due to a lack of understanding of the interactions that these proteins participate in at the NE membrane. To assist in the characterization of NE transmembrane protein interactions we developed an arrayed library of integral and peripheral membrane proteins from the fission yeast Schizosaccharomyces pombe for high-throughput screening using the split-ubiquitin based membrane yeast two -hybrid system. We used this approach to characterize protein interactions for three conserved proteins that localize to the inner nuclear membrane: Cut11/Ndc1, Lem2 and Ima1/Samp1/Net5. Additionally, we determined how the interaction network for Cut11 is altered in canonical temperature-sensitive cut11-ts mutants. This library and screening approach is readily applicable to characterizing the interactomes of integral membrane proteins localizing to various subcellular compartments.

scholarly journals C. elegans Nuclear Envelope Proteins Emerin, MAN1, Lamin, and Nucleoporins Reveal Unique Timing of Nuclear Envelope Breakdown during Mitosis

2000 ◽  
Vol 11 (9) ◽  
pp. 3089-3099 ◽  
Author(s):  
Kenneth K. Lee ◽  
Yosef Gruenbaum ◽  
Perah Spann ◽  
Jun Liu ◽  
Katherine L. Wilson
Keyword(s):  
Membrane Proteins ◽  
Nuclear Envelope ◽  
Integral Membrane Proteins ◽  
C Elegans ◽  
Nuclear Envelope Breakdown ◽  
Spindle Poles ◽  
Sds Page ◽  
Early Anaphase ◽  
Extraction Properties ◽  
Pore Complexes

Emerin, MAN1, and LAP2 are integral membrane proteins of the vertebrate nuclear envelope. They share a 43-residue N-terminal motif termed the LEM domain. We found three putative LEM domain genes inCaenorhabditis elegans, designated emr-1,lem-2, and lem-3. We analyzedemr-l, which encodes Ce-emerin, andlem-2, which encodes Ce-MAN1. Ce-emerin and Ce-MAN1 migrate on SDS-PAGE as 17- and 52-kDa proteins, respectively. Based on their biochemical extraction properties and immunolocalization, both Ce-emerin and Ce-MAN1 are integral membrane proteins localized at the nuclear envelope. We used antibodies against Ce-MAN1, Ce-emerin, nucleoporins, and Ce-lamin to determine the timing of nuclear envelope breakdown during mitosis in C. elegans. The C. elegans nuclear envelope disassembles very late compared with vertebrates and Drosophila. The nuclear membranes remained intact everywhere except near spindle poles during metaphase and early anaphase, fully disassembling only during mid-late anaphase. Disassembly of pore complexes, and to a lesser extent the lamina, depended on embryo age: pore complexes were absent during metaphase in >30-cell embryos but existed until anaphase in 2- to 24-cell embryos. Intranuclear mRNA splicing factors disassembled after prophase. The timing of nuclear disassembly in C. elegans is novel and may reflect its evolutionary position between unicellular and more complex eukaryotes.

scholarly journals Brr6 and Brl1 locate to nuclear pore complex assembly sites to promote their biogenesis

2018 ◽  
Vol 217 (3) ◽  
pp. 877-894 ◽  
Author(s):  
Wanlu Zhang ◽  
Annett Neuner ◽  
Diana Rüthnick ◽  
Timo Sachsenheimer ◽  
Christian Lüchtenborg ◽  
...  
Keyword(s):  
Membrane Proteins ◽  
Nuclear Envelope ◽  
Nuclear Pore Complex ◽  
Lipid Composition ◽  
Fluorescent Protein ◽  
Yellow Fluorescent Protein ◽  
Protein Analysis ◽  
Integral Membrane Proteins ◽  
Nuclear Pore ◽  
Direct Role

The paralogous Brr6 and Brl1 are conserved integral membrane proteins of the nuclear envelope (NE) with an unclear role in nuclear pore complex (NPC) biogenesis. Here, we analyzed double-degron mutants of Brr6/Brl1 to understand this function. Depletion of Brr6 and Brl1 caused defects in NPC biogenesis, whereas the already assembled NPCs remained unaffected. This NPC biogenesis defect was not accompanied by a change in lipid composition. However, Brl1 interacted with Ndc1 and Nup188 by immunoprecipitation, and with transmembrane and outer and inner ring NPC components by split yellow fluorescent protein analysis, indicating a direct role in NPC biogenesis. Consistently, we found that Brr6 and Brl1 associated with a subpopulation of NPCs and emerging NPC assembly sites. Moreover, BRL1 overexpression affected NE morphology without a change in lipid composition and completely suppressed the nuclear pore biogenesis defect of nup116Δ and gle2Δ cells. We propose that Brr6 and Brl1 transiently associate with NPC assembly sites where they promote NPC biogenesis.

scholarly journals Lamins in disease: why do ubiquitously expressed nuclear envelope proteins give rise to tissue-specific disease phenotypes?

2001 ◽  
Vol 114 (1) ◽  
pp. 9-19 ◽  
Author(s):  
C.J. Hutchison ◽  
M. Alvarez-Reyes ◽  
O.A. Vaughan
Keyword(s):  
Membrane Proteins ◽  
Nuclear Envelope ◽  
Dna Sequences ◽  
Genetic Disorders ◽  
Integral Membrane Proteins ◽  
Partial Lipodystrophy ◽  
Nuclear Lamins ◽  
Disease Phenotypes

The nuclear lamina is a filamentous structure composed of lamins that supports the inner nuclear membrane. Several integral membrane proteins including emerin, LBR, LAP1 and LAP2 bind to nuclear lamins in vitro and can influence lamin function and dynamics in vivo. Results from various studies suggest that lamins function in DNA replication and nuclear envelope assembly and determine the size and shape of the nuclear envelope. In addition, lamins also bind chromatin and certain DNA sequences, and might influence chromosome position. Recent evidence has revealed that mutations in A-type lamins give rise to a range of rare, but dominant, genetic disorders, including Emery-Dreifuss muscular dystrophy, dilated cardiomyopathy with conduction-system disease and Dunnigan-type familial partial lipodystrophy. An examination of how lamins A/C, emerin and other integral membrane proteins interact at the INM provides the basis for a novel model for how mutations that promote disease phenotypes are likely to influence these interactions and therefore cause cellular pathology through a combination of weakness of the lamina or altered gene expression.

Integral Membrane Proteins Associated with the Nuclear Lamina Are Novel Autoimmune Antigens of the Nuclear Envelope

1995 ◽  
Vol 74 (1) ◽  
pp. 89-99 ◽  
Author(s):  
K. Konstantinov ◽  
R. Foisner ◽  
D. Byrd ◽  
F.-T. Liu ◽  
W.-M. Tsai ◽  
...  
Keyword(s):  
Membrane Proteins ◽  
Nuclear Envelope ◽  
Nuclear Lamina ◽  
Integral Membrane Proteins

scholarly journals High-throughput identification of nuclear envelope protein interactions in Schizosaccharomyces pombe using an arrayed membrane yeast-two hybrid library

2020 ◽  
Author(s):  
Joseph M. Varberg ◽  
Jennifer M. Gardner ◽  
Scott McCroskey ◽  
Snehabala Saravanan ◽  
William D. Bradford ◽  
...  
Keyword(s):  
Membrane Proteins ◽  
Nuclear Envelope ◽  
Schizosaccharomyces Pombe ◽  
High Throughput ◽  
Protein Interactions ◽  
Transmembrane Protein ◽  
Integral Membrane Proteins ◽  
Model Organisms ◽  
Yeast Two Hybrid ◽  
Two Hybrid

The nuclear envelope (NE) contains a specialized set of integral membrane proteins that maintain nuclear shape and integrity and influence chromatin organization and gene expression. Advances in proteomics techniques and studies in model organisms have identified hundreds of proteins that localize to the NE. However, the function of many of these proteins at the NE remains unclear, in part due to a lack of understanding of the interactions that these proteins participate in at the NE membrane. To assist in the characterization of NE transmembrane protein interactions we developed an arrayed library of integral and peripheral membrane proteins in the fission yeast Schizosaccharomyces pombe for high-throughput screening using the split-ubiquitin based membrane yeast two hybrid sys-tem. We used this approach to characterize protein interactions for three conserved proteins that localize to the inner nu-clear membrane: Cut11/Ndc1, Lem2, and Ima1/Samp1/NET5. Additionally, we determined how the interaction network for Cut11 is altered in canonical temperature-sensitive cut11 mutants. This library and screening approach is readily applicable to characterizing the interactomes of integral membrane proteins localizing to various subcellular compartments.

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